Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	SYF2 pre-mRNA-splicing factor
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000117614	SYF2	9606	-	1:25222679-25232502	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000236273		SYF2-001	25222679-25232493	protein_coding
	ENST00000354361		SYF2-004	25222965-25232486	protein_coding
	ENST00000474160		SYF2-003	25229015-25232432	processed_transcript
	ENST00000476231		SYF2-002	25230309-25232502	processed_transcript

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000236273	28.298±0.00	21.374±0.00	7.708±0.00	9.791±2.50	12.071±4.35	19.929±12.34	6.802±2.81	14.538±9.99	9.589±3.25	11.732±2.11	9.709±8.45	21.669±7.39	22.369±2.61	21.548±6.68
ENST00000354361	6.351±0.00	7.750±0.00	N/A	7.766±0.00	8.605±0.00	24.489±0.00	5.245±0.00	N/A	2.934±0.00	6.073±0.00	7.313±0.00	10.208±0.74	4.233±0.00	10.396±0.00
ENST00000474160	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	55.379±0.00	44.808±0.00	45.509±0.00

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000398	IC	mRNA splicing, via spliceosome
GO:0001701	IEA	in utero embryonic development
GO:0005634	IDA	nucleus
GO:0007095	IEA	mitotic G2 DNA damage checkpoint
GO:0007369	IEA	gastrulation
GO:0044822	IDA	poly(A) RNA binding
GO:0048568	IEA	embryonic organ development
GO:0071013	IDA	catalytic step 2 spliceosome

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000004706	syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein_coding	Danio_rerio
ENSMUSG00000028821	Syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein_coding	Mus_musculus

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