C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 63
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028834 Trim63 10090 + 4:134315120-134329629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030638 Trim63-001 134315122-134329609 protein_coding
  ENSMUST00000105875 Trim63-201 134315120-134329629 protein_coding
  ENSMUST00000134164 Trim63-002 134315212-134317367 retained_intron
  ENSMUST00000135576 Trim63-003 134319988-134329628 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030638ENSMUST00000105875ENSMUST00000134164ENSMUST00000135576
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030638 0.149±0.02 0.056±0.06 N/A 0.042±0.03 3.684±4.84 13.612±1.40 0.843±0.23 0.050±0.01 1.177±0.60 N/A 0.299±0.07 0.455±0.17 0.383±0.12
ENSMUST00000105875 0.150±0.02 0.070±0.04 0.031±0.02 0.066±0.04 3.339±3.72 64.539±7.95 0.769±0.00 0.129±0.01 1.486±0.73 130.096±21.33 0.391±0.24 0.264±0.00 0.549±0.33
ENSMUST00000134164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A
ENSMUST00000135576 0.025±0.00 N/A 0.003±0.00 0.032±0.00 N/A N/A N/A 0.016±0.01 N/A N/A 0.143±0.08 1.164±1.06 0.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HZ CIL_0008HZ_0002 VISTA 4:134170100-134773977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0006936 ISA muscle contraction
GO:0008270 IEA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0014732 IEA skeletal muscle atrophy
GO:0014878 IEA response to electrical stimulus involved in regulation of muscle adaptation
GO:0016567 IDA protein ubiquitination
GO:0031432 IEA titin binding
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043292 ISA contractile fiber
GO:0051384 IEA response to glucocorticoid
GO:0070555 IEA response to interleukin-1
GO:0071549 IDA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028027 trim63 tripartite motif containing 63 protein_coding Danio_rerio
ENSDARG00000086685 tripartite motif containing 63, E3 ubiquitin protein ligase protein_coding Danio_rerio
ENSG00000158022 TRIM63 tripartite motif containing 63, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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