C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: yrdC domain containing (E.coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028889 Yrdc 10090 + 4:124850679-124855242 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102628 Yrdc-001 124850679-124855242 protein_coding
  ENSMUST00000144851 Yrdc-002 124851351-124854478 protein_coding
  ENSMUST00000173434 Yrdc-003 124851895-124854718 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000102628ENSMUST00000173434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000102628 12.478±3.37 38.862±7.80 16.890±3.43 23.059±4.78 19.081±7.39 20.358±2.27 8.262±0.81 12.984±3.65 14.123±3.18 17.418±2.14 5.789±0.96 30.676±12.64 18.665±4.41
ENSMUST00000173434 N/A N/A N/A N/A 38.553±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0016020 IDA membrane
GO:0051051 ISA negative regulation of transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041428 yrdc yrdC N(6)-threonylcarbamoyltransferase domain containing protein_coding Danio_rerio
ENSG00000196449 YRDC yrdC N(6)-threonylcarbamoyltransferase domain containing protein_coding Homo_sapiens

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