C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: yrdC domain containing (E.coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102628 Yrdc-001 ENSMUSG00000028889 10090 + 4:124850679-124855242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000102628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000102628 12.478±3.37 38.862±7.80 16.890±3.43 23.059±4.78 19.081±7.39 20.358±2.27 8.262±0.81 12.984±3.65 14.123±3.18 17.418±2.14 5.789±0.96 30.676±12.64 18.665±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0016020 IDA membrane
GO:0051051 ISA negative regulation of transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373043 C1orf122-002 protein_coding Homo_sapiens 0 494
ENST00000373044 YRDC-001 protein_coding Homo_sapiens 0 909
ENST00000424606 YRDCP2-001 processed_pseudogene Homo_sapiens 0 353
ENST00000468084 C1orf122-003 protein_coding Homo_sapiens 0 494
ENST00000621419 RP11-533K9.4-001 processed_pseudogene Homo_sapiens 0 374

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