C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle-associated membrane protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028955 Vamp3 10090 - 4:151047300-151057963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030797 Vamp3-001 151047300-151057953 protein_coding
  ENSMUST00000125205 Vamp3-003 151055911-151057963 retained_intron
  ENSMUST00000155446 Vamp3-002 151050409-151057946 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030797ENSMUST00000155446
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030797 42.692±5.06 18.836±1.18 34.321±2.55 19.440±10.96 34.435±11.13 32.320±3.32 24.531±0.96 24.034±2.29 13.534±9.53 50.038±6.50 19.381±0.95 24.480±7.20 35.232±14.65 25.576±11.61
ENSMUST00000155446 N/A N/A N/A N/A N/A N/A N/A N/A 12.204±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001921 IDA positive regulation of receptor recycling
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006461 IEA protein complex assembly
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 IDA vesicle-mediated transport
GO:0016324 IEA apical plasma membrane
GO:0017075 IEA syntaxin-1 binding
GO:0017156 IMP calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030136 IEA clathrin-coated vesicle
GO:0030141 IDA secretory granule
GO:0030665 IEA clathrin-coated vesicle membrane
GO:0031201 IEA SNARE complex
GO:0031410 IDA cytoplasmic vesicle
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0035493 IDA SNARE complex assembly
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0043005 IEA neuron projection
GO:0043229 IEA intracellular organelle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045202 IEA synapse
GO:0055037 ISO recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070161 vamp3 vesicle-associated membrane protein 3 (cellubrevin) protein_coding Danio_rerio
ENSG00000049245 VAMP3 vesicle-associated membrane protein 3 protein_coding Homo_sapiens

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