C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030797 Vamp3-001 ENSMUSG00000028955 10090 - 4:151047300-151057953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030797 42.692±5.06 18.836±1.18 34.321±2.55 19.440±10.96 34.435±11.13 32.320±3.32 24.531±0.96 24.034±2.29 13.534±9.53 50.038±6.50 19.381±0.95 24.480±7.20 35.232±14.65 25.576±11.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001921 IDA positive regulation of receptor recycling
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006461 IEA protein complex assembly
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 IDA vesicle-mediated transport
GO:0016324 IEA apical plasma membrane
GO:0017075 IEA syntaxin-1 binding
GO:0017156 IMP calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030136 IEA clathrin-coated vesicle
GO:0030141 IDA secretory granule
GO:0030665 IEA clathrin-coated vesicle membrane
GO:0031201 IEA SNARE complex
GO:0031410 IDA cytoplasmic vesicle
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0035493 IDA SNARE complex assembly
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0043005 IEA neuron projection
GO:0043229 IEA intracellular organelle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045202 IEA synapse
GO:0055037 ISO recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000054666 VAMP3-001 protein_coding Homo_sapiens 0 568
ENST00000470357 VAMP3-002 protein_coding Homo_sapiens 0 387

Loading