C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028962 Slc4a2 10090 + 5:24423837-24440950 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080067 Slc4a2-001 24425232-24440950 protein_coding
  ENSMUST00000115047 Slc4a2-002 24428423-24440947 protein_coding
  ENSMUST00000115049 Slc4a2-009 24428208-24440947 protein_coding
  ENSMUST00000127315 Slc4a2-004 24423853-24430149 processed_transcript
  ENSMUST00000132505 Slc4a2-013 24435545-24436487 retained_intron
  ENSMUST00000136440 Slc4a2-010 24428263-24429838 processed_transcript
  ENSMUST00000139081 Slc4a2-008 24425285-24427703 processed_transcript
  ENSMUST00000140722 Slc4a2-014 24439746-24440572 retained_intron
  ENSMUST00000141966 Slc4a2-005 24423859-24429882 protein_coding
  ENSMUST00000144305 Slc4a2-006 24425276-24427589 processed_transcript
  ENSMUST00000146765 Slc4a2-012 24431336-24434352 retained_intron
  ENSMUST00000153274 Slc4a2-003 24423837-24427612 protein_coding
  ENSMUST00000155598 Slc4a2-007 24426831-24429852 protein_coding
  ENSMUST00000155636 Slc4a2-011 24429018-24429779 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000080067ENSMUST00000115049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000080067 9.321±0.31 N/A 12.360±0.34 3.384±0.77 N/A N/A N/A 5.188±0.36 6.963±0.49 9.060±1.17 15.655±3.67 N/A
ENSMUST00000115049 10.413±0.62 14.110±1.23 7.096±0.59 4.214±0.80 13.327±1.90 45.580±4.89 18.311±3.75 7.273±0.99 12.892±1.52 19.353±2.64 28.827±16.74 2.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004ES CIL_0004ES_0002 CGP 5:24418250-24440950
CIL_0004ER CIL_0004ER_0002 CGP 5:24423837-24445287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005925 IEA focal adhesion
GO:0006820 IEA anion transport
GO:0006821 IDA chloride transport
GO:0015108 IDA chloride transmembrane transporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028173 slc4a2a solute carrier family 4, anion exchanger, member 2a protein_coding Danio_rerio
ENSDARG00000052330 slc4a2b solute carrier family 4, anion exchanger, member 2b protein_coding Danio_rerio
ENSG00000164889 SLC4A2 solute carrier family 4 (anion exchanger), member 2 protein_coding Homo_sapiens

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