C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080067 Slc4a2-001 ENSMUSG00000028962 10090 + 5:24425232-24440950 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverLungOvaryPlacentaENSMUST00000080067
Transcript ID Adipose Bladder Brain Liver Lung Ovary Placenta
ENSMUST00000080067 9.321±0.31 12.360±0.34 3.384±0.77 5.188±0.36 6.963±0.49 9.060±1.17 15.655±3.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004ES CIL_0004ES_0002 CGP 5:24418250-24440950
CIL_0004ER CIL_0004ER_0002 CGP 5:24423837-24445287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005925 IEA focal adhesion
GO:0006820 IEA anion transport
GO:0006821 IDA chloride transport
GO:0015108 IDA chloride transmembrane transporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310317 SLC4A2-201 protein_coding Homo_sapiens 0 3951
ENST00000392826 SLC4A2-004 protein_coding Homo_sapiens 0 4220
ENST00000413384 SLC4A2-001 protein_coding Homo_sapiens 0 4604
ENST00000460010 SLC4A2-018 retained_intron Homo_sapiens 0 315
ENST00000461735 SLC4A2-005 protein_coding Homo_sapiens 0 4220
ENST00000469467 SLC4A2-021 retained_intron Homo_sapiens 0 333
ENST00000472204 SLC4A2-020 retained_intron Homo_sapiens 0 283
ENST00000480107 SLC4A2-016 retained_intron Homo_sapiens 0 573
ENST00000482697 SLC4A2-019 processed_transcript Homo_sapiens 0 388
ENST00000485713 SLC4A2-002 protein_coding Homo_sapiens 0 4361
ENST00000493040 SLC4A2-017 retained_intron Homo_sapiens 0 433
ENST00000494125 SLC4A2-013 retained_intron Homo_sapiens 0 523

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