C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164889 SLC4A2 9606 + 7:151057210-151076527 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310317 SLC4A2-201 151061251-151076522 protein_coding
  ENST00000392826 SLC4A2-004 151062547-151076522 protein_coding
  ENST00000413384 SLC4A2-001 151059570-151076527 protein_coding
  ENST00000460010 SLC4A2-018 151071665-151074117 retained_intron
  ENST00000461735 SLC4A2-005 151062634-151076523 protein_coding
  ENST00000463414 SLC4A2-011 151061244-151064760 protein_coding
  ENST00000466368 SLC4A2-008 151058200-151061960 processed_transcript
  ENST00000469355 SLC4A2-014 151070354-151071132 retained_intron
  ENST00000469467 SLC4A2-021 151075983-151076524 retained_intron
  ENST00000472204 SLC4A2-020 151072004-151075312 retained_intron
  ENST00000480107 SLC4A2-016 151070717-151071601 retained_intron
  ENST00000482697 SLC4A2-019 151071729-151074085 processed_transcript
  ENST00000482950 SLC4A2-010 151061217-151064691 protein_coding
  ENST00000483786 SLC4A2-007 151057210-151064744 protein_coding
  ENST00000485713 SLC4A2-002 151058212-151076526 protein_coding
  ENST00000488420 SLC4A2-012 151061589-151064361 protein_coding
  ENST00000490898 SLC4A2-009 151060070-151064895 protein_coding
  ENST00000493040 SLC4A2-017 151071477-151072136 retained_intron
  ENST00000494125 SLC4A2-013 151059591-151064697 retained_intron
  ENST00000494298 SLC4A2-015 151070517-151071167 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310317ENST00000392826ENST00000413384ENST00000460010ENST00000461735ENST00000472204ENST00000480107ENST00000488420ENST00000494125
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.548±0.00 18.331±0.00 4.094±0.00
ENST00000392826 N/A N/A N/A N/A N/A N/A 1.650±0.00 N/A N/A N/A 7.133±0.71 4.601±0.00 N/A
ENST00000413384 11.487±0.00 2.518±0.00 8.413±0.00 4.551±3.49 5.739±0.00 3.043±2.64 5.617±4.33 4.873±0.00 3.842±0.00 2.969±0.00 12.177±8.60 17.792±9.38 5.700±0.00
ENST00000460010 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.116±0.00 N/A N/A N/A
ENST00000461735 N/A N/A N/A N/A 0.948±0.00 N/A N/A N/A N/A N/A 2.880±0.00 N/A N/A
ENST00000472204 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.268±0.00 N/A N/A N/A
ENST00000480107 N/A N/A N/A N/A N/A 1.689±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000488420 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.409±0.00 N/A N/A N/A
ENST00000494125 N/A N/A N/A 1.583±0.00 N/A N/A N/A 2.735±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004ET CIL_0004ET_0001 CGP 7:151048292-151058530
CIL_0004ES CIL_0004ES_0001 CGP 7:151053812-151076527
CIL_0004ER CIL_0004ER_0001 CGP 7:151057210-151080866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006820 IEA anion transport
GO:0006821 IEA chloride transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015108 IEA chloride transmembrane transporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028173 slc4a2a solute carrier family 4, anion exchanger, member 2a protein_coding Danio_rerio
ENSDARG00000052330 slc4a2b solute carrier family 4, anion exchanger, member 2b protein_coding Danio_rerio
ENSMUSG00000028962 Slc4a2 solute carrier family 4 (anion exchanger), member 2 protein_coding Mus_musculus

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