C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029179 Zcchc4 10090 + 5:52775409-52824665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031077 Zcchc4-003 52783055-52823571 protein_coding
  ENSMUST00000113901 Zcchc4-002 52775409-52823828 protein_coding
  ENSMUST00000113904 Zcchc4-001 52783055-52824665 protein_coding
  ENSMUST00000143745 Zcchc4-006 52804326-52815882 retained_intron
  ENSMUST00000149612 Zcchc4-005 52798030-52819183 processed_transcript
  ENSMUST00000157074 Zcchc4-004 52783106-52800168 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031077ENSMUST00000113904ENSMUST00000157074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031077 0.384±0.08 0.629±0.11 0.540±0.02 0.759±0.00 0.435±0.08 0.394±0.17 0.266±0.04 0.383±0.09 0.410±0.19 0.553±0.05 0.197±0.03 0.530±0.14 0.355±0.07 0.271±0.00
ENSMUST00000113904 3.188±1.39 4.226±1.03 2.528±0.32 3.762±1.10 3.695±0.47 2.586±0.79 2.110±0.15 2.076±1.00 2.949±1.51 3.603±0.69 2.029±0.28 3.764±0.94 4.618±1.01 1.963±0.80
ENSMUST00000157074 0.501±0.17 N/A N/A 0.556±0.03 0.396±0.03 0.301±0.01 N/A N/A 0.216±0.00 0.353±0.00 N/A 0.599±0.21 0.401±0.08 0.255±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OW CIL_0002OW_0002 CGP 5:52741587-52824665
CIL_0002F9 CIL_0002F9_0002 CGP 5:52775409-52867797

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018810 ZCCHC4 zinc finger, CCHC domain containing 4 protein_coding Danio_rerio
ENSG00000168228 ZCCHC4 zinc finger, CCHC domain containing 4 protein_coding Homo_sapiens

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