C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700016H13 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029320 1700016H13Rik 10090 - 5:103648039-103656010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031261 1700016H13Rik-003 103648587-103655723 nonsense_mediated_decay
  ENSMUST00000119824 1700016H13Rik-002 103648039-103656010 protein_coding
  ENSMUST00000120108 1700016H13Rik-004 103648593-103655748 protein_coding
  ENSMUST00000120688 1700016H13Rik-007 103648771-103655723 protein_coding
  ENSMUST00000134926 1700016H13Rik-001 103648429-103655732 protein_coding
  ENSMUST00000154096 1700016H13Rik-005 103648771-103655724 nonsense_mediated_decay
  ENSMUST00000154408 1700016H13Rik-006 103648698-103655723 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000031261ENSMUST00000119824ENSMUST00000120108ENSMUST00000120688ENSMUST00000134926ENSMUST00000154096ENSMUST00000154408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000031261 N/A 0.081±0.02 N/A 0.025±0.01 N/A 0.171±0.07 0.064±0.02 0.065±0.02 N/A 0.136±0.06 0.253±0.09 N/A N/A
ENSMUST00000119824 0.073±0.02 N/A 0.021±0.00 0.039±0.02 N/A 0.114±0.03 N/A N/A 0.026±0.00 0.059±0.02 0.092±0.09 0.058±0.06 N/A
ENSMUST00000120108 N/A N/A N/A 0.042±0.01 N/A 0.123±0.00 N/A N/A 0.039±0.02 0.040±0.01 N/A 0.100±0.00 133.979±19.21
ENSMUST00000120688 N/A N/A N/A N/A 0.024±0.00 N/A 0.047±0.03 0.015±0.01 N/A N/A 0.264±0.01 N/A N/A
ENSMUST00000134926 N/A 0.031±0.02 0.090±0.00 0.034±0.00 0.086±0.00 N/A 0.059±0.00 N/A 0.012±0.00 0.061±0.04 0.036±0.00 0.039±0.00 95.956±6.01
ENSMUST00000154096 N/A N/A N/A N/A 0.061±0.00 N/A 0.046±0.01 0.060±0.00 0.004±0.00 N/A N/A 0.143±0.04 N/A
ENSMUST00000154408 N/A N/A N/A N/A 0.207±0.00 N/A 0.067±0.00 0.143±0.00 N/A N/A 0.236±0.05 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J3 CIL_0006J3_0002 CGP 5:103605711-103656010
CIL_0006J2 CIL_0006J2_0002 CGP 5:103648039-103855322

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000163633 C4orf36 chromosome 4 open reading frame 36 protein_coding Homo_sapiens

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