C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006J2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163633-ENSG00000172493 CGP 9606 4:86876205-87141054
GeneTranscriptPositionBiotype
ENSG00000163633 (C4orf36)
chromosome 4 open reading frame 36 		ENST00000295898 (C4orf36-001) 86876205-86892395 protein_coding
ENST00000462714 (C4orf36-003) 86886797-86892410 nonsense_mediated_decay
ENST00000473559 (C4orf36-002) 86886472-86934732 protein_coding
ENST00000503001 (C4orf36-012) 86888140-86936178 processed_transcript
ENST00000503159 (C4orf36-006) 86935451-86936202 processed_transcript
ENST00000504008 (C4orf36-008) 86887871-86892413 protein_coding
ENST00000504371 (C4orf36-010) 86888160-86892422 processed_transcript
ENST00000506308 (C4orf36-011) 86887775-86892416 protein_coding
ENST00000506484 (C4orf36-005) 86925867-86936179 retained_intron
ENST00000508280 (C4orf36-004) 86924894-86934850 retained_intron
ENST00000509262 (C4orf36-007) 86933165-86934542 retained_intron
ENST00000512468 (C4orf36-009) 86887845-86892320 nonsense_mediated_decay
ENSG00000172493 (AFF1)
AF4/FMR2 family, member 1 		ENST00000307808 (AFF1-001) 87006988-87141038 protein_coding
ENST00000395146 (AFF1-201) 86935002-87141054 protein_coding
ENST00000503369 (AFF1-006) 87114943-87125277 retained_intron
ENST00000503477 (AFF1-008) 86935050-87105682 protein_coding
ENST00000504956 (AFF1-002) 86935002-87048049 retained_intron
ENST00000507468 (AFF1-007) 86935011-87091824 protein_coding
ENST00000511442 (AFF1-005) 86936410-87046890 protein_coding
ENST00000511722 (AFF1-003) 87007243-87108300 protein_coding
ENST00000511996 (AFF1-009) 86935074-86974068 processed_transcript
ENST00000514970 (AFF1-004) 87049652-87108312 protein_coding
ENST00000544085 (AFF1-202) 87007396-87135701 protein_coding
ENSG00000235043 (TECRP1)
trans-2,3-enoyl-CoA reductase pseudogene 1 		ENST00000513307 (TECRP1-001) 86949669-86950113 processed_pseudogene
ENSG00000251411 (RP11-397E7.4)
 ENST00000514631 (RP11-397E7.4-001) 86913266-86914817 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0006J2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029320-ENSMUSG00000029313 CGP 10090 5:103648039-103855322
GeneTranscriptPositionBiotype
ENSMUSG00000029313 (Aff1)
AF4/FMR2 family, member 1 		ENSMUST00000031256 (Aff1-201) 103754573-103855322 protein_coding
ENSMUST00000054979 (Aff1-001) 103754162-103855322 protein_coding
ENSMUST00000126335 (Aff1-003) 103692374-103816428 retained_intron
ENSMUST00000152145 (Aff1-004) 103784359-103811595 retained_intron
ENSMUST00000153165 (Aff1-002) 103754564-103842253 protein_coding
ENSMUSG00000029320 (1700016H13Rik)
RIKEN cDNA 1700016H13 gene 		ENSMUST00000031261 (1700016H13Rik-003) 103648587-103655723 nonsense_mediated_decay
ENSMUST00000119824 (1700016H13Rik-002) 103648039-103656010 protein_coding
ENSMUST00000120108 (1700016H13Rik-004) 103648593-103655748 protein_coding
ENSMUST00000120688 (1700016H13Rik-007) 103648771-103655723 protein_coding
ENSMUST00000134926 (1700016H13Rik-001) 103648429-103655732 protein_coding
ENSMUST00000154096 (1700016H13Rik-005) 103648771-103655724 nonsense_mediated_decay
ENSMUST00000154408 (1700016H13Rik-006) 103648698-103655723 nonsense_mediated_decay
ENSMUSG00000088121 (Gm25721)
predicted gene, 25721 		ENSMUST00000157496 (Gm25721-201) 103658237-103658407 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J2_0001ENSG00000163633ENST00000295898ENST00000462714ENST00000473559ENST00000503001ENST00000503159ENST00000504008ENST00000504371ENST00000506308ENST00000506484ENST00000508280ENST00000509262ENST00000512468ENSG00000172493ENST00000307808ENST00000395146ENST00000503369ENST00000503477ENST00000504956ENST00000507468ENST00000511442ENST00000511722ENST00000511996ENST00000514970ENST00000544085ENSG00000235043ENST00000513307ENSG00000251411ENST00000514631CIL_0006J2_0002ENSMUSG00000029313ENSMUST00000031256ENSMUST00000054979ENSMUST00000126335ENSMUST00000152145ENSMUST00000153165ENSMUSG00000029320ENSMUST00000031261ENSMUST00000119824ENSMUST00000120108ENSMUST00000120688ENSMUST00000134926ENSMUST00000154096ENSMUST00000154408ENSMUSG00000088121ENSMUST00000157496
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J2_0001ENSG00000163633ENST00000295898ENST00000462714ENST00000473559ENST00000503001ENST00000503159ENST00000506308ENST00000506484ENST00000508280ENST00000509262ENST00000512468ENSG00000172493ENST00000307808ENST00000395146ENST00000504956ENST00000511996ENSG00000235043ENST00000513307ENSG00000251411ENST00000514631CIL_0006J2_0002ENSMUSG00000029313ENSMUST00000031256ENSMUST00000054979ENSMUST00000126335ENSMUSG00000029320ENSMUST00000031261ENSMUST00000119824ENSMUST00000120108ENSMUST00000120688ENSMUST00000134926ENSMUST00000154096ENSMUST00000154408ENSMUSG00000088121ENSMUST00000157496
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163633 ENST00000295898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.647±0.00
ENST00000462714 0.303±0.00 N/A N/A 0.207±0.00 N/A N/A N/A N/A N/A 0.410±0.00 N/A 0.524±0.08 N/A 0.775±0.00
ENST00000473559 0.345±0.00 0.930±0.00 0.399±0.00 1.155±0.00 0.826±0.23 0.381±0.00 0.672±0.33 1.218±0.00 0.413±0.24 0.175±0.00 N/A 0.518±0.29 0.500±0.08 0.948±0.08
ENST00000503001 N/A N/A N/A N/A N/A 0.797±0.00 N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A
ENST00000503159 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.393±0.00 N/A N/A N/A N/A
ENST00000504008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.326±0.00
ENST00000506484 N/A N/A N/A N/A 0.870±0.00 N/A N/A N/A 0.251±0.00 1.329±0.00 0.859±0.00 N/A 1.929±0.00 N/A
ENST00000508280 0.327±0.00 N/A 1.058±0.00 0.136±0.00 0.743±0.30 0.615±0.20 0.417±0.00 0.645±0.00 0.459±0.00 0.633±0.00 0.202±0.00 0.270±0.00 1.558±0.00 N/A
ENST00000509262 N/A N/A N/A N/A N/A 1.511±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.722±0.00 N/A N/A N/A
ENSG00000172493 ENST00000307808 7.306±0.00 1.440±0.00 1.250±0.00 0.879±0.00 2.117±0.00 2.493±0.00 3.702±0.00 2.767±0.00 2.693±0.00 4.097±0.29 4.501±2.59 1.841±0.49 1.848±0.00 1.471±1.14
ENST00000395146 4.738±0.00 1.759±0.00 2.081±0.00 1.673±0.46 1.450±0.00 2.252±0.00 3.477±0.00 2.199±0.00 0.912±0.24 3.616±1.07 9.781±0.00 3.820±3.24 2.524±1.64 0.943±0.61
ENST00000503369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504956 N/A N/A N/A 1.738±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.433±0.00 N/A N/A N/A
ENST00000514970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235043 ENST00000513307 0.063±0.00 N/A N/A 1.235±0.00 N/A 0.963±0.00 N/A N/A N/A 2.052±0.00 N/A 0.098±0.00 0.172±0.00 N/A
ENSG00000251411 ENST00000514631 0.348±0.00 0.264±0.00 0.153±0.00 0.031±0.00 0.527±0.00 0.113±0.00 0.198±0.00 0.477±0.00 0.013±0.00 0.139±0.03 0.038±0.00 0.088±0.02 0.094±0.01 0.222±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029313 ENSMUST00000031256 N/A N/A N/A N/A 0.802±0.00 1.369±0.00 0.450±0.00 N/A 1.752±1.20 N/A 1.090±0.00 5.294±0.00 0.683±0.49 N/A
ENSMUST00000054979 3.516±1.05 2.235±0.99 4.553±0.49 0.646±0.21 2.999±0.86 3.998±1.58 2.845±0.33 5.101±1.48 2.758±1.35 8.559±0.83 3.757±0.72 3.809±1.72 1.149±0.66 0.481±0.25
ENSMUST00000126335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.011±0.00 N/A N/A
ENSMUST00000152145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029320 ENSMUST00000031261 N/A 0.081±0.02 N/A 0.025±0.01 N/A 0.171±0.07 0.064±0.02 0.065±0.02 N/A 0.136±0.06 N/A 0.253±0.09 N/A N/A
ENSMUST00000119824 0.073±0.02 N/A 0.021±0.00 0.039±0.02 N/A 0.114±0.03 N/A N/A 0.026±0.00 0.059±0.02 N/A 0.092±0.09 0.058±0.06 N/A
ENSMUST00000120108 N/A N/A N/A 0.042±0.01 N/A 0.123±0.00 N/A N/A 0.039±0.02 0.040±0.01 N/A N/A 0.100±0.00 133.979±19.21
ENSMUST00000120688 N/A N/A N/A N/A 0.024±0.00 N/A 0.047±0.03 0.015±0.01 N/A N/A N/A 0.264±0.01 N/A N/A
ENSMUST00000134926 N/A 0.031±0.02 0.090±0.00 0.034±0.00 0.086±0.00 N/A 0.059±0.00 N/A 0.012±0.00 0.061±0.04 N/A 0.036±0.00 0.039±0.00 95.956±6.01
ENSMUST00000154096 N/A N/A N/A N/A 0.061±0.00 N/A 0.046±0.01 0.060±0.00 0.004±0.00 N/A N/A N/A 0.143±0.04 N/A
ENSMUST00000154408 N/A N/A N/A N/A 0.207±0.00 N/A 0.067±0.00 0.143±0.00 N/A N/A N/A 0.236±0.05 N/A N/A
ENSMUSG00000088121 ENSMUST00000157496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.929±1.73

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