C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029729 Zkscan1 10090 + 5:138085084-138107822 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019660 Zkscan1-001 138085084-138107822 protein_coding
  ENSMUST00000066617 Zkscan1-201 138085084-138107822 protein_coding
  ENSMUST00000110962 Zkscan1-003 138092640-138104491 protein_coding
  ENSMUST00000110963 Zkscan1-002 138085120-138104492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019660ENSMUST00000066617ENSMUST00000110962ENSMUST00000110963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019660 2.678±1.50 3.977±0.43 3.989±0.09 5.160±0.96 2.169±0.61 4.004±0.85 1.452±0.28 5.627±0.68 2.066±0.25 3.856±0.12 0.827±0.19 4.392±1.49 1.868±0.48 1.433±0.12
ENSMUST00000066617 N/A N/A N/A 2.018±1.00 N/A N/A N/A N/A 0.363±0.00 N/A 0.211±0.09 N/A N/A N/A
ENSMUST00000110962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.12 N/A
ENSMUST00000110963 1.539±0.21 1.634±0.46 1.398±0.27 N/A 1.133±0.27 1.293±0.42 0.852±0.11 1.250±0.14 1.308±0.57 1.254±0.37 0.235±0.04 2.666±1.05 1.513±0.37 1.240±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002F6 CIL_0002F6_0002 CGP 5:138085084-138134265

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000106261 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 protein_coding Homo_sapiens

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