C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106261 ZKSCAN1 9606 + 7:100015572-100041689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324306 ZKSCAN1-001 100015581-100041689 protein_coding
  ENST00000426572 ZKSCAN1-003 100015599-100034271 protein_coding
  ENST00000432317 ZKSCAN1-004 100016822-100023882 protein_coding
  ENST00000482979 ZKSCAN1-002 100015599-100024960 retained_intron
  ENST00000535170 ZKSCAN1-201 100015572-100041688 protein_coding
  ENST00000620510 ZKSCAN1-202 100023408-100041688 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324306ENST00000426572ENST00000482979ENST00000535170ENST00000620510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324306 3.465±0.00 1.849±0.00 3.432±0.00 6.103±2.88 2.949±0.25 2.880±1.11 2.033±0.62 10.561±0.00 2.128±0.46 3.599±0.16 1.022±0.00 7.612±4.07 1.367±0.65 8.164±0.00
ENST00000426572 N/A N/A 3.506±0.00 3.802±0.00 3.938±0.00 5.981±0.00 2.528±0.00 N/A 4.400±0.00 N/A N/A 10.804±0.00 N/A N/A
ENST00000482979 N/A N/A N/A N/A N/A N/A N/A N/A 6.767±0.00 6.085±0.00 N/A N/A N/A N/A
ENST00000535170 N/A N/A N/A N/A 2.052±0.00 3.128±0.00 0.776±0.00 6.093±0.00 3.429±0.00 N/A N/A 3.048±0.80 2.060±1.37 2.858±0.00
ENST00000620510 1.209±0.00 N/A N/A N/A N/A 0.691±0.00 0.548±0.00 3.365±0.00 N/A N/A 0.795±0.00 1.396±0.00 0.561±0.38 1.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002F6 CIL_0002F6_0001 CGP 7:100015572-100065038

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA:NAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029729 Zkscan1 zinc finger with KRAB and SCAN domains 1 protein_coding Mus_musculus

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