C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110963 Zkscan1-002 ENSMUSG00000029729 10090 + 5:138085120-138104492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110963
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110963 1.539±0.21 1.634±0.46 1.398±0.27 1.133±0.27 1.293±0.42 0.852±0.11 1.250±0.14 1.308±0.57 1.254±0.37 0.235±0.04 2.666±1.05 1.513±0.37 1.240±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002F6 CIL_0002F6_0002 CGP 5:138085084-138134265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320451 ZNF121-004 protein_coding Homo_sapiens 6e-17 94
ENST00000324306 ZKSCAN1-001 protein_coding Homo_sapiens 0 939
ENST00000343325 ZNF791-001 protein_coding Homo_sapiens 0.000006 58
ENST00000343381 ZNF669-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000372699 ZNF684-001 protein_coding Homo_sapiens 0.000000000008 77
ENST00000426572 ZKSCAN1-003 protein_coding Homo_sapiens 0 939
ENST00000432317 ZKSCAN1-004 protein_coding Homo_sapiens 0 438
ENST00000446165 ZNF791-002 protein_coding Homo_sapiens 0.000009 58
ENST00000448299 ZNF669-005 protein_coding Homo_sapiens 0.00000001 66
ENST00000482979 ZKSCAN1-002 retained_intron Homo_sapiens 0 684
ENST00000493756 ZNF684-005 processed_transcript Homo_sapiens 0.000000000005 77
ENST00000535170 ZKSCAN1-201 protein_coding Homo_sapiens 0 939
ENST00000586602 ZNF121-003 protein_coding Homo_sapiens 3e-16 94
ENST00000620510 ZKSCAN1-202 protein_coding Homo_sapiens 0 939

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