C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box P1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030067 Foxp1 10090 - 6:98925338-99522721 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074346 Foxp1-001 98930090-99163018 protein_coding
  ENSMUST00000075832 Foxp1-005 99152058-99266515 processed_transcript
  ENSMUST00000113321 Foxp1-009 99006685-99028266 protein_coding
  ENSMUST00000113322 Foxp1-201 98925342-99435345 protein_coding
  ENSMUST00000113324 Foxp1-007 98930090-99163018 protein_coding
  ENSMUST00000113326 Foxp1-004 98925338-99266515 protein_coding
  ENSMUST00000113328 Foxp1-006 98930090-99163018 protein_coding
  ENSMUST00000113329 Foxp1-008 98930090-99163018 protein_coding
  ENSMUST00000123992 Foxp1-013 99003393-99044459 protein_coding
  ENSMUST00000124058 Foxp1-011 98945534-99028313 protein_coding
  ENSMUST00000131967 Foxp1-003 99161940-99266532 retained_intron
  ENSMUST00000138754 Foxp1-002 99161940-99266532 retained_intron
  ENSMUST00000142164 Foxp1-010 98952201-99003680 retained_intron
  ENSMUST00000154163 Foxp1-012 99003200-99028942 protein_coding
  ENSMUST00000175670 Foxp1-029 99016550-99027991 protein_coding
  ENSMUST00000175838 Foxp1-032 99435236-99522721 processed_transcript
  ENSMUST00000175880 Foxp1-028 98930171-98935545 retained_intron
  ENSMUST00000175886 Foxp1-019 99009933-99096205 protein_coding
  ENSMUST00000176105 Foxp1-018 99308377-99436396 processed_transcript
  ENSMUST00000176148 Foxp1-031 99434751-99445607 retained_intron
  ENSMUST00000176565 Foxp1-014 98929189-99520997 protein_coding
  ENSMUST00000176632 Foxp1-026 98930090-99435345 protein_coding
  ENSMUST00000176850 Foxp1-027 98930090-99435345 protein_coding
  ENSMUST00000177208 Foxp1-030 99075962-99248336 protein_coding
  ENSMUST00000177227 Foxp1-033 99162929-99521162 protein_coding
  ENSMUST00000177229 Foxp1-023 98930090-99028259 protein_coding
  ENSMUST00000177230 Foxp1-024 98930090-99163018 nonsense_mediated_decay
  ENSMUST00000177235 Foxp1-017 99260357-99522647 processed_transcript
  ENSMUST00000177307 Foxp1-020 98930090-99163018 protein_coding
  ENSMUST00000177410 Foxp1-025 98925415-98929785 processed_transcript
  ENSMUST00000177437 Foxp1-021 98929466-99028258 protein_coding
  ENSMUST00000177507 Foxp1-022 99009944-99044442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113322ENSMUST00000113326ENSMUST00000113328ENSMUST00000124058ENSMUST00000175886ENSMUST00000177208ENSMUST00000177229ENSMUST00000177307ENSMUST00000177437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113322 4.170±0.62 2.889±0.86 7.540±1.82 7.102±4.49 6.685±0.55 9.481±2.35 2.683±0.00 N/A 1.481±0.68 10.991±0.00 0.757±0.08 8.265±1.94 1.538±0.00 0.823±0.65
ENSMUST00000113326 N/A 2.423±0.00 2.799±0.00 N/A 6.991±1.16 8.483±0.00 2.076±0.00 1.272±0.00 N/A 10.312±0.00 N/A 13.387±0.00 1.125±0.00 1.456±0.00
ENSMUST00000113328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.032±1.74 N/A N/A
ENSMUST00000124058 8.454±0.00 7.652±0.30 N/A N/A N/A 21.332±3.18 N/A N/A N/A 34.554±0.00 N/A 15.336±2.37 N/A N/A
ENSMUST00000175886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.405±0.00 N/A N/A
ENSMUST00000177208 N/A 60.215±0.00 N/A N/A 260.054±0.00 N/A N/A N/A 27.835±1.85 N/A N/A 264.117±82.90 N/A N/A
ENSMUST00000177229 N/A 4.746±0.00 N/A N/A N/A 21.198±2.87 N/A N/A N/A 21.699±0.00 N/A N/A N/A N/A
ENSMUST00000177307 N/A 4.162±0.05 N/A N/A 10.430±3.69 N/A N/A 2.607±0.65 2.695±0.55 N/A N/A 11.244±1.50 N/A 3.896±1.19
ENSMUST00000177437 6.684±1.91 4.315±0.64 N/A N/A 11.999±3.43 21.446±5.72 3.757±0.22 3.522±0.55 2.029±0.40 23.789±5.13 N/A 11.651±2.74 2.759±0.24 7.505±2.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L4 CIL_0007L4_0002 UCNEbase 6:98080124-99467654
CIL_00032Q CIL_00032Q_0002 CGP 6:98238014-99522721
CIL_00094D CIL_00094D_0002 VISTA 6:98325750-98927137
CIL_0009A7 CIL_0009A7_0002 VISTA 6:98467392-99069033
CIL_0008N6 CIL_0008N6_0002 VISTA 6:98644759-99245317
CIL_00096K CIL_00096K_0002 VISTA 6:98652036-99253088
CIL_0007PZ CIL_0007PZ_0002 VISTA 6:98668191-99269077
CIL_0008OZ CIL_0008OZ_0002 VISTA 6:98712965-99314601
CIL_00086J CIL_00086J_0002 VISTA 6:98766719-99368664
CIL_000840 CIL_000840_0002 VISTA 6:98803307-99405363
CIL_0007XT CIL_0007XT_0002 VISTA 6:98869018-99470092
CIL_0007SI CIL_0007SI_0002 VISTA 6:98889657-99491464
CIL_0008LZ CIL_0008LZ_0002 VISTA 6:98901230-99503437

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IMP in utero embryonic development
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0002329 IMP pre-B cell differentiation
GO:0002639 IMP positive regulation of immunoglobulin production
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007519 IGI skeletal muscle tissue development
GO:0008045 IMP motor neuron axon guidance
GO:0021517 IEP ventral spinal cord development
GO:0030324 IGI lung development
GO:0033152 IMP immunoglobulin V(D)J recombination
GO:0042803 IPI protein homodimerization activity
GO:0043565 IEA sequence-specific DNA binding
GO:0045214 IGI sarcomere organization
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048745 IGI smooth muscle tissue development
GO:0050679 IGI positive regulation of epithelial cell proliferation
GO:0055007 IMP cardiac muscle cell differentiation
GO:0060043 IGI regulation of cardiac muscle cell proliferation
GO:0061140 IGI lung secretory cell differentiation
GO:0072358 IGI cardiovascular system development
GO:1901249 IGI regulation of lung goblet cell differentiation
GO:1901250 IGI negative regulation of lung goblet cell differentiation
GO:2000727 IMP positive regulation of cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014181 foxp1b forkhead box P1b protein_coding Danio_rerio
ENSG00000114861 FOXP1 forkhead box P1 protein_coding Homo_sapiens

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