C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177437 Foxp1-021 ENSMUSG00000030067 10090 - 6:98929466-99028258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000177437
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000177437 6.684±1.91 4.315±0.64 11.999±3.43 21.446±5.72 3.757±0.22 3.522±0.55 2.029±0.40 23.789±5.13 11.651±2.74 2.759±0.24 7.505±2.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L4 CIL_0007L4_0002 UCNEbase 6:98080124-99467654
CIL_00032Q CIL_00032Q_0002 CGP 6:98238014-99522721
CIL_00094D CIL_00094D_0002 VISTA 6:98325750-98927137
CIL_0009A7 CIL_0009A7_0002 VISTA 6:98467392-99069033
CIL_0008N6 CIL_0008N6_0002 VISTA 6:98644759-99245317
CIL_00096K CIL_00096K_0002 VISTA 6:98652036-99253088
CIL_0007PZ CIL_0007PZ_0002 VISTA 6:98668191-99269077
CIL_0008OZ CIL_0008OZ_0002 VISTA 6:98712965-99314601
CIL_00086J CIL_00086J_0002 VISTA 6:98766719-99368664
CIL_000840 CIL_000840_0002 VISTA 6:98803307-99405363
CIL_0007XT CIL_0007XT_0002 VISTA 6:98869018-99470092
CIL_0007SI CIL_0007SI_0002 VISTA 6:98889657-99491464
CIL_0008LZ CIL_0008LZ_0002 VISTA 6:98901230-99503437

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IMP in utero embryonic development
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0002329 IMP pre-B cell differentiation
GO:0002639 IMP positive regulation of immunoglobulin production
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007519 IGI skeletal muscle tissue development
GO:0008045 IMP motor neuron axon guidance
GO:0021517 IEP ventral spinal cord development
GO:0030324 IGI lung development
GO:0033152 IMP immunoglobulin V(D)J recombination
GO:0042803 IPI protein homodimerization activity
GO:0045214 IGI sarcomere organization
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048745 IGI smooth muscle tissue development
GO:0050679 IGI positive regulation of epithelial cell proliferation
GO:0055007 IMP cardiac muscle cell differentiation
GO:0060043 IGI regulation of cardiac muscle cell proliferation
GO:0061140 IGI lung secretory cell differentiation
GO:0072358 IGI cardiovascular system development
GO:1901249 IGI regulation of lung goblet cell differentiation
GO:1901250 IGI negative regulation of lung goblet cell differentiation
GO:2000727 IMP positive regulation of cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121544 foxp1a-201 protein_coding Danio_rerio 0 392
ENSDART00000129022 foxp1a-004 protein_coding Danio_rerio 0 392
ENST00000318789 FOXP1-001 protein_coding Homo_sapiens 0 2643
ENST00000327590 FOXP1-003 nonsense_mediated_decay Homo_sapiens 0 2041
ENST00000460805 FOXP1-022 retained_intron Homo_sapiens 0 479
ENST00000468577 FOXP1-012 protein_coding Homo_sapiens 0 1838
ENST00000472382 FOXP1-020 protein_coding Homo_sapiens 0 809
ENST00000475937 FOXP1-004 protein_coding Homo_sapiens 0 2643
ENST00000484350 FOXP1-005 protein_coding Homo_sapiens 0 2298
ENST00000485326 FOXP1-021 protein_coding Homo_sapiens 0 1066
ENST00000491238 FOXP1-011 protein_coding Homo_sapiens 0 2643
ENST00000493089 FOXP1-002 protein_coding Homo_sapiens 0 2623
ENST00000497355 FOXP1-009 protein_coding Homo_sapiens 0 2298
ENST00000497553 FOXP1-019 protein_coding Homo_sapiens 0 549
ENST00000498215 FOXP1-006 protein_coding Homo_sapiens 0 2643
ENST00000610810 FOXP1-023 protein_coding Homo_sapiens 3e-26 122
ENST00000614176 FOXP1-201 protein_coding Homo_sapiens 0 2776
ENST00000614183 FOXP1-025 processed_transcript Homo_sapiens 0 926
ENST00000615603 FOXP1-202 protein_coding Homo_sapiens 0 1838

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