C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030109 Slc6a12 10090 + 6:121343076-121365775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032200 Slc6a12-002 121346618-121365775 protein_coding
  ENSMUST00000163771 Slc6a12-009 121356918-121365372 nonsense_mediated_decay
  ENSMUST00000165456 Slc6a12-008 121356918-121365372 nonsense_mediated_decay
  ENSMUST00000166390 Slc6a12-010 121347419-121355326 nonsense_mediated_decay
  ENSMUST00000166457 Slc6a12-001 121343076-121365372 protein_coding
  ENSMUST00000168295 Slc6a12-003 121343399-121347607 protein_coding
  ENSMUST00000170339 Slc6a12-005 121358965-121363856 retained_intron
  ENSMUST00000170582 Slc6a12-006 121356833-121363326 retained_intron
  ENSMUST00000171008 Slc6a12-007 121347419-121365372 protein_coding
  ENSMUST00000171874 Slc6a12-004 121356820-121361910 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032200ENSMUST00000163771ENSMUST00000165456ENSMUST00000166390ENSMUST00000166457ENSMUST00000168295ENSMUST00000170339ENSMUST00000170582ENSMUST00000171008ENSMUST00000171874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032200 0.414±0.28 0.084±0.02 0.032±0.00 0.107±0.01 0.176±0.00 0.182±0.00 0.079±0.00 1.272±0.00 22.624±19.60 0.093±0.03 0.033±0.00 0.089±0.06 9.319±0.20 0.158±0.00
ENSMUST00000163771 N/A 0.191±0.10 0.056±0.00 N/A 0.348±0.00 N/A N/A N/A N/A 0.136±0.00 0.091±0.05 0.230±0.10 N/A 0.020±0.00
ENSMUST00000165456 0.481±0.00 0.163±0.00 N/A N/A 0.351±0.00 N/A 0.080±0.00 N/A N/A 0.167±0.00 N/A 0.068±0.00 N/A N/A
ENSMUST00000166390 N/A 0.171±0.00 N/A 0.632±0.00 N/A 0.496±0.00 N/A N/A N/A 0.368±0.00 0.155±0.00 0.398±0.28 9.635±0.00 N/A
ENSMUST00000166457 0.354±0.09 N/A 0.018±0.01 0.118±0.04 0.259±0.14 0.177±0.00 N/A 0.753±0.25 17.216±11.98 0.047±0.00 0.065±0.00 0.109±0.08 12.067±9.88 0.090±0.00
ENSMUST00000168295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.00 0.691±0.47 N/A N/A
ENSMUST00000170339 N/A 0.158±0.08 N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 0.113±0.00 0.332±0.29 N/A N/A
ENSMUST00000170582 N/A N/A N/A N/A 0.392±0.00 N/A 0.058±0.01 N/A N/A 0.133±0.01 N/A 0.177±0.00 N/A N/A
ENSMUST00000171008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 0.111±0.00 N/A N/A
ENSMUST00000171874 N/A 0.085±0.03 0.041±0.00 N/A N/A 0.321±0.00 N/A N/A N/A 0.098±0.00 N/A 0.254±0.10 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0009992 IEA cellular water homeostasis
GO:0010033 IEA response to organic substance
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0071474 IEA cellular hyperosmotic response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111181 SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 protein_coding Homo_sapiens

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