C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032200 Slc6a12-002 ENSMUSG00000030109 10090 + 6:121346618-121365775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032200 0.414±0.28 0.084±0.02 0.032±0.00 0.107±0.01 0.176±0.00 0.182±0.00 0.079±0.00 1.272±0.00 22.624±19.60 0.093±0.03 0.033±0.00 0.089±0.06 9.319±0.20 0.158±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0009992 IEA cellular water homeostasis
GO:0010033 IEA response to organic substance
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0055085 IEA transmembrane transport
GO:0071474 IEA cellular hyperosmotic response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343164 SLC6A13-001 protein_coding Homo_sapiens 0 850
ENST00000359674 SLC6A12-001 protein_coding Homo_sapiens 0 2036
ENST00000397296 SLC6A12-201 protein_coding Homo_sapiens 0 2036
ENST00000424061 SLC6A12-002 protein_coding Homo_sapiens 0 2036
ENST00000436453 SLC6A13-002 protein_coding Homo_sapiens 1e-37 161
ENST00000445055 SLC6A13-201 protein_coding Homo_sapiens 0 608
ENST00000534887 SLC6A13-009 retained_intron Homo_sapiens 5e-38 161
ENST00000535347 SLC6A12-008 protein_coding Homo_sapiens 4e-39 165
ENST00000535498 SLC6A12-011 processed_transcript Homo_sapiens 0 676
ENST00000536116 SLC6A12-007 processed_transcript Homo_sapiens 0 329
ENST00000536824 SLC6A12-004 protein_coding Homo_sapiens 0 2010
ENST00000536842 SLC6A13-008 retained_intron Homo_sapiens 0 403
ENST00000537793 SLC6A12-005 protein_coding Homo_sapiens 0 510
ENST00000537826 SLC6A12-003 retained_intron Homo_sapiens 0 237
ENST00000538272 SLC6A12-009 processed_transcript Homo_sapiens 0 479
ENST00000539260 SLC6A13-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000540094 SLC6A12-015 retained_intron Homo_sapiens 0 484
ENST00000542379 SLC6A13-015 processed_transcript Homo_sapiens 2e-36 156
ENST00000544782 SLC6A12-014 retained_intron Homo_sapiens 0 562
ENST00000545058 SLC6A12-013 retained_intron Homo_sapiens 0 496
ENST00000546319 SLC6A13-004 protein_coding Homo_sapiens 2.8026e-45 185

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