C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter), member 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111181 SLC6A12 9606 - 12:190077-214570 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359674 SLC6A12-001 190077-213697 protein_coding
  ENST00000397296 SLC6A12-201 190077-210605 protein_coding
  ENST00000424061 SLC6A12-002 190136-213338 protein_coding
  ENST00000535347 SLC6A12-008 202869-214090 protein_coding
  ENST00000535498 SLC6A12-011 196234-199771 processed_transcript
  ENST00000536116 SLC6A12-007 202740-213545 processed_transcript
  ENST00000536824 SLC6A12-004 191068-214120 protein_coding
  ENST00000537793 SLC6A12-005 202792-211216 protein_coding
  ENST00000537826 SLC6A12-003 209696-214570 retained_intron
  ENST00000538272 SLC6A12-009 197911-203507 processed_transcript
  ENST00000538424 SLC6A12-006 212072-213717 processed_transcript
  ENST00000538580 SLC6A12-010 201228-202782 retained_intron
  ENST00000540094 SLC6A12-015 198671-202814 retained_intron
  ENST00000542825 SLC6A12-012 195226-199054 retained_intron
  ENST00000544782 SLC6A12-014 196830-199060 retained_intron
  ENST00000545058 SLC6A12-013 190086-199058 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359674ENST00000397296ENST00000536116ENST00000536824ENST00000537793ENST00000537826ENST00000538272ENST00000538580ENST00000540094ENST00000545058
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359674 N/A N/A N/A 1.273±0.00 N/A N/A N/A 3.621±0.00 7.231±0.00 N/A N/A N/A 0.040±0.00 N/A
ENST00000397296 N/A N/A 1.623±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536116 N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536824 0.189±0.00 0.263±0.00 N/A 2.626±0.00 N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A 0.224±0.00 0.549±0.00
ENST00000537793 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.736±0.00 N/A N/A N/A N/A
ENST00000537826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A
ENST00000538272 N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A N/A N/A N/A 0.112±0.00 N/A N/A
ENST00000538580 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A
ENST00000540094 0.143±0.00 N/A N/A N/A 0.155±0.00 1.130±0.00 N/A N/A N/A N/A N/A N/A N/A 1.971±0.00
ENST00000545058 0.067±0.00 N/A N/A N/A 0.132±0.00 0.124±0.00 0.102±0.00 18.071±0.00 5.445±0.00 0.110±0.00 0.052±0.00 0.133±0.00 0.083±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 TAS ion transport
GO:0006836 IEA neurotransmitter transport
GO:0006865 TAS amino acid transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0009992 IEA cellular water homeostasis
GO:0010033 IEA response to organic substance
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 TAS:IEA integral component of membrane
GO:0055085 IEA:TAS transmembrane transport
GO:0071474 IEA cellular hyperosmotic response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030109 Slc6a12 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 protein_coding Mus_musculus

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