C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: wingless-type MMTV integration site family, member 5B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119369 Wnt5b-001 ENSMUSG00000030170 10090 - 6:119432534-119544318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119369 2.611±2.08 0.838±0.35 2.217±0.41 0.769±0.13 2.982±0.85 2.088±0.78 1.038±0.36 0.790±0.17 0.157±0.08 1.120±0.42 0.223±0.00 4.164±2.01 0.473±0.19 1.393±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C2 CIL_0006C2_0002 CGP 6:119353150-119544347
CIL_0003XK CIL_0003XK_0003 CGP 6:119432531-119544347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005109 IBA frizzled binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IBA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0009887 TAS organ morphogenesis
GO:0009986 IDA cell surface
GO:0016055 IEA Wnt signaling pathway
GO:0030182 IBA neuron differentiation
GO:0031012 IDA extracellular matrix
GO:0045165 IBA cell fate commitment
GO:0045600 IGI positive regulation of fat cell differentiation
GO:0090090 IGI negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310594 WNT5B-005 protein_coding Homo_sapiens 0 1365
ENST00000397196 WNT5B-001 protein_coding Homo_sapiens 0 1365
ENST00000537031 WNT5B-007 protein_coding Homo_sapiens 0 1349
ENST00000542408 WNT5B-009 protein_coding Homo_sapiens 0 189
ENST00000543071 WNT5B-004 protein_coding Homo_sapiens 0 935
ENST00000545747 WNT5B-010 processed_transcript Homo_sapiens 0 619

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