C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Y box protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030189 Ybx3 10090 - 6:131364858-131388450 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032309 Ybx3-201 131364858-131388450 protein_coding
  ENSMUST00000087865 Ybx3-202 131364858-131388450 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032309ENSMUST00000087865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032309 16.158±0.30 15.721±2.79 10.336±0.00 14.352±10.04 17.357±6.65 20.436±3.55 8.931±2.27 7.385±0.43 16.036±15.80 10.752±1.17 117.025±9.20 37.573±4.68 28.036±16.00 327.037±195.26
ENSMUST00000087865 25.766±1.16 21.794±15.34 57.546±5.38 10.519±5.18 31.290±8.68 103.516±15.50 25.928±1.65 11.744±2.16 46.061±53.11 25.326±3.86 386.606±102.59 61.709±31.20 111.702±123.14 456.212±502.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K7 CIL_0000K7_0002 CGP 6:131299144-131388450

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IGI in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0005921 ISO gap junction
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IMP spermatogenesis
GO:0008584 IMP male gonad development
GO:0009566 IMP fertilization
GO:0030529 IDA ribonucleoprotein complex
GO:0043066 IMP negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0046622 IMP positive regulation of organ growth
GO:0048642 IDA negative regulation of skeletal muscle tissue development
GO:0060546 IEA negative regulation of necroptotic process
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071474 IEA cellular hyperosmotic response
GO:1902219 IEA negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000060138 YBX3 Y box binding protein 3 protein_coding Homo_sapiens

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