C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000K7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000060140-ENSG00000060138 CGP 9606 12:10618939-10723312
GeneTranscriptPositionBiotype
ENSG00000060138 (YBX3)
Y box binding protein 3 		ENST00000228251 (YBX3-001) 10699213-10723312 protein_coding
ENST00000279550 (YBX3-003) 10699089-10723307 protein_coding
ENST00000366286 (YBX3-015) 10699610-10702642 processed_transcript
ENST00000366290 (YBX3-018) 10701254-10702371 retained_intron
ENST00000536107 (YBX3-006) 10717808-10722909 retained_intron
ENST00000536823 (YBX3-016) 10699478-10704438 retained_intron
ENST00000539204 (YBX3-007) 10704023-10718430 processed_transcript
ENST00000540447 (YBX3-002) 10699227-10722911 retained_intron
ENST00000540747 (YBX3-004) 10718117-10722396 processed_transcript
ENST00000540975 (YBX3-017) 10699317-10702475 processed_transcript
ENST00000541351 (YBX3-014) 10701275-10710714 nonsense_mediated_decay
ENST00000542002 (YBX3-010) 10701253-10716148 retained_intron
ENST00000542641 (YBX3-008) 10701274-10718115 retained_intron
ENST00000544501 (YBX3-009) 10715695-10718114 processed_transcript
ENST00000544504 (YBX3-013) 10702010-10710686 processed_transcript
ENST00000544622 (YBX3-012) 10710351-10718121 processed_transcript
ENST00000546164 (YBX3-011) 10699427-10710120 processed_transcript
ENST00000546298 (YBX3-005) 10713229-10722046 processed_transcript
ENSG00000060140 (STYK1)
serine/threonine/tyrosine kinase 1 		ENST00000075503 (STYK1-001) 10618939-10674292 protein_coding
ENST00000535345 (STYK1-003) 10633981-10674030 protein_coding
ENST00000538867 (STYK1-005) 10631247-10673658 protein_coding
ENST00000541561 (STYK1-004) 10634055-10674318 protein_coding
ENST00000542562 (STYK1-002) 10631234-10674050 protein_coding
ENST00000542924 (STYK1-006) 10627640-10629638 protein_coding
CIL_0000K7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032899-ENSMUSG00000030189 CGP 10090 6:131299144-131388450
GeneTranscriptPositionBiotype
ENSMUSG00000030189 (Ybx3)
Y box protein 3 		ENSMUST00000032309 (Ybx3-201) 131364858-131388450 protein_coding
ENSMUST00000087865 (Ybx3-202) 131364858-131388450 protein_coding
ENSMUSG00000032899 (Styk1)
serine/threonine/tyrosine kinase 1 		ENSMUST00000049150 (Styk1-001) 131299144-131313827 protein_coding
ENSMUST00000121078 (Styk1-002) 131300133-131316398 protein_coding
ENSMUST00000135859 (Styk1-003) 131311192-131353597 processed_transcript
ENSMUST00000145390 (Styk1-004) 131338358-131353594 processed_transcript
ENSMUSG00000065036 (Gm22362)
predicted gene, 22362 		ENSMUST00000083102 (Gm22362-201) 131380273-131380406 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000K7_0001ENSG00000060138ENST00000228251ENST00000279550ENST00000366286ENST00000366290ENST00000536107ENST00000536823ENST00000539204ENST00000540447ENST00000540747ENST00000540975ENST00000541351ENST00000542002ENST00000542641ENST00000544501ENST00000544504ENST00000544622ENST00000546164ENST00000546298ENSG00000060140ENST00000075503ENST00000535345ENST00000538867ENST00000541561ENST00000542562ENST00000542924CIL_0000K7_0002ENSMUSG00000030189ENSMUST00000032309ENSMUST00000087865ENSMUSG00000032899ENSMUST00000049150ENSMUST00000121078ENSMUST00000135859ENSMUST00000145390ENSMUSG00000065036ENSMUST00000083102
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000K7_0001ENSG00000060138ENST00000228251ENST00000279550ENST00000539204ENST00000540447ENST00000540975ENST00000542002ENST00000542641ENST00000546164ENST00000546298ENSG00000060140ENST00000075503ENST00000542562ENST00000542924CIL_0000K7_0002ENSMUSG00000030189ENSMUST00000032309ENSMUST00000087865ENSMUSG00000032899ENSMUST00000049150ENSMUST00000121078ENSMUST00000135859ENSMUST00000145390ENSMUSG00000065036ENSMUST00000083102
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000060138 ENST00000228251 105.390±0.00 43.414±0.00 N/A 11.609±0.00 66.921±0.00 161.735±0.00 61.495±58.27 49.098±0.00 4.198±1.50 168.891±0.00 785.777±724.78 50.619±2.03 45.439±13.84 180.078±10.55
ENST00000279550 107.956±0.00 67.943±0.00 N/A 0.514±0.00 48.082±36.38 64.421±57.51 77.272±69.83 52.013±0.00 6.787±0.00 181.275±0.00 1822.722±1715.09 40.364±25.33 31.778±11.37 135.488±0.00
ENST00000366286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539204 N/A N/A N/A 1.440±0.00 26.657±0.00 N/A 11.140±0.00 N/A 18.313±0.00 N/A 280.519±0.00 22.159±0.00 N/A N/A
ENST00000540447 N/A N/A 0.650±0.00 0.558±0.43 N/A 2.357±0.00 0.856±0.00 N/A 2.861±0.00 3.530±0.00 N/A 3.693±1.44 N/A N/A
ENST00000540747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540975 N/A N/A 4.153±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542002 N/A N/A N/A N/A N/A 6.123±0.00 N/A N/A 11.146±0.00 N/A N/A 10.918±0.00 N/A N/A
ENST00000542641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 146.290±0.00 82.893±0.00 408.964±0.00
ENST00000544501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546164 102.818±0.00 73.927±0.00 N/A N/A N/A N/A N/A 1.554±0.00 4.485±0.00 169.764±0.00 N/A N/A N/A N/A
ENST00000546298 N/A N/A N/A N/A N/A N/A N/A 2.030±0.00 N/A N/A N/A 60.953±0.00 52.900±0.00 317.594±0.00
ENSG00000060140 ENST00000075503 N/A N/A N/A 0.800±0.00 N/A N/A 0.020±0.00 N/A 0.011±0.00 N/A N/A 1.006±0.99 0.577±0.00 N/A
ENST00000535345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542562 N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000542924 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030189 ENSMUST00000032309 16.158±0.30 15.721±2.79 10.336±0.00 14.352±10.04 17.357±6.65 20.436±3.55 8.931±2.27 7.385±0.43 16.036±15.80 10.752±1.17 117.025±9.20 37.573±4.68 28.036±16.00 327.037±195.26
ENSMUST00000087865 25.766±1.16 21.794±15.34 57.546±5.38 10.519±5.18 31.290±8.68 103.516±15.50 25.928±1.65 11.744±2.16 46.061±53.11 25.326±3.86 386.606±102.59 61.709±31.20 111.702±123.14 456.212±502.05
ENSMUSG00000032899 ENSMUST00000049150 0.112±0.06 0.174±0.00 1.537±0.43 0.069±0.00 0.087±0.04 10.775±4.29 0.060±0.01 N/A 0.019±0.00 0.209±0.12 0.027±0.01 0.338±0.21 0.108±0.06 0.031±0.00
ENSMUST00000121078 0.290±0.18 0.141±0.06 N/A N/A 0.185±0.07 9.436±2.16 0.039±0.00 0.292±0.14 0.096±0.07 0.242±0.12 0.024±0.01 0.459±0.14 0.110±0.00 0.063±0.05
ENSMUST00000135859 N/A N/A N/A N/A 0.266±0.00 N/A N/A 0.832±0.00 N/A N/A N/A N/A N/A 0.110±0.00
ENSMUST00000145390 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.082±0.00
ENSMUSG00000065036 ENSMUST00000083102 N/A N/A N/A 3.889±0.00 1488.450±845.81 N/A 1286.795±398.12 N/A N/A N/A 2.838±0.82 N/A N/A N/A

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