C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032309 Ybx3-201 ENSMUSG00000030189 10090 - 6:131364858-131388450 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032309 16.158±0.30 15.721±2.79 10.336±0.00 14.352±10.04 17.357±6.65 20.436±3.55 8.931±2.27 7.385±0.43 16.036±15.80 10.752±1.17 117.025±9.20 37.573±4.68 28.036±16.00 327.037±195.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K7 CIL_0000K7_0002 CGP 6:131299144-131388450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IGI in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0005921 ISO gap junction
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IMP spermatogenesis
GO:0008584 IMP male gonad development
GO:0009566 IMP fertilization
GO:0030529 IDA ribonucleoprotein complex
GO:0043066 IMP negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0046622 IMP positive regulation of organ growth
GO:0048642 IDA negative regulation of skeletal muscle tissue development
GO:0060546 IEA negative regulation of necroptotic process
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071474 IEA cellular hyperosmotic response
GO:1902219 IEA negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228251 YBX3-001 protein_coding Homo_sapiens 0 1814
ENST00000279550 YBX3-003 protein_coding Homo_sapiens 0 887
ENST00000366286 YBX3-015 processed_transcript Homo_sapiens 0 344
ENST00000366290 YBX3-018 retained_intron Homo_sapiens 0 287
ENST00000536107 YBX3-006 retained_intron Homo_sapiens 0 209
ENST00000536823 YBX3-016 retained_intron Homo_sapiens 0 542
ENST00000539204 YBX3-007 processed_transcript Homo_sapiens 0 728
ENST00000540447 YBX3-002 retained_intron Homo_sapiens 0 719
ENST00000540747 YBX3-004 processed_transcript Homo_sapiens 7e-27 124
ENST00000540975 YBX3-017 processed_transcript Homo_sapiens 0 580
ENST00000541351 YBX3-014 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000542002 YBX3-010 retained_intron Homo_sapiens 0 359
ENST00000542641 YBX3-008 retained_intron Homo_sapiens 0 344
ENST00000544504 YBX3-013 processed_transcript Homo_sapiens 0 553
ENST00000546164 YBX3-011 processed_transcript Homo_sapiens 0 845
ENST00000546298 YBX3-005 processed_transcript Homo_sapiens 0 405
ENST00000566722 YBX3P1-001 processed_pseudogene Homo_sapiens 0 1033

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