C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ets variant 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030199 Etv6 10090 + 6:134035700-134270158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081028 Etv6-001 134035700-134270158 protein_coding
  ENSMUST00000111963 Etv6-002 134035700-134270158 protein_coding
  ENSMUST00000145869 Etv6-003 134247565-134248557 protein_coding
  ENSMUST00000164648 Etv6-005 134035969-134248284 protein_coding
  ENSMUST00000169529 Etv6-004 134233600-134262019 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081028ENSMUST00000111963ENSMUST00000169529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081028 3.308±0.86 6.071±0.60 6.595±0.37 1.849±1.17 4.660±0.83 4.214±1.01 1.731±0.17 2.561±1.11 1.742±0.46 3.276±0.57 0.570±0.09 7.253±2.22 1.856±0.65 N/A
ENSMUST00000111963 3.152±0.73 1.236±0.14 6.740±0.33 1.558±0.55 3.090±0.63 2.695±0.72 1.229±0.37 2.427±0.78 1.097±0.34 2.616±0.43 0.996±0.27 5.851±2.71 2.389±0.47 0.933±0.27
ENSMUST00000169529 N/A 8.848±1.55 N/A N/A 11.993±0.85 7.544±2.04 N/A N/A 1.845±0.03 6.118±0.17 N/A 15.468±3.09 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K4 CIL_0000K4_0002 CGP 6:134035700-134438736

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0019904 IEA protein domain specific binding
GO:0030154 IDA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069193 ets variant 6 protein_coding Danio_rerio
ENSG00000139083 ETV6 ets variant 6 protein_coding Homo_sapiens

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