C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081028 Etv6-001 ENSMUSG00000030199 10090 + 6:134035700-134270158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000081028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000081028 3.308±0.86 6.071±0.60 6.595±0.37 1.849±1.17 4.660±0.83 4.214±1.01 1.731±0.17 2.561±1.11 1.742±0.46 3.276±0.57 0.570±0.09 7.253±2.22 1.856±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K4 CIL_0000K4_0002 CGP 6:134035700-134438736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0019904 IEA protein domain specific binding
GO:0030154 IDA cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266427 ETV6-005 protein_coding Homo_sapiens 8.00001e-41 169
ENST00000396373 ETV6-001 protein_coding Homo_sapiens 0 2054
ENST00000541426 ETV6-003 processed_transcript Homo_sapiens 0 361
ENST00000544715 ETV6-002 processed_transcript Homo_sapiens 0 204
ENST00000545027 ETV6-004 protein_coding Homo_sapiens 0 331

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