C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030452 Nipa2 10090 - 7:55931287-55962476 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032635 Nipa2-001 55931287-55962476 protein_coding
  ENSMUST00000117812 Nipa2-004 55931287-55962439 protein_coding
  ENSMUST00000119041 Nipa2-007 55931287-55962245 protein_coding
  ENSMUST00000119201 Nipa2-003 55931287-55962450 protein_coding
  ENSMUST00000126604 Nipa2-009 55935856-55962430 protein_coding
  ENSMUST00000130239 Nipa2-010 55933515-55938068 retained_intron
  ENSMUST00000135849 Nipa2-002 55941951-55962468 retained_intron
  ENSMUST00000143325 Nipa2-008 55944610-55962173 protein_coding
  ENSMUST00000147950 Nipa2-006 55933250-55962392 processed_transcript
  ENSMUST00000152649 Nipa2-005 55935808-55962476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032635ENSMUST00000117812ENSMUST00000119041ENSMUST00000126604ENSMUST00000152649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032635 4.124±0.80 5.847±0.45 11.144±1.13 9.814±0.09 2.070±0.16 6.273±3.14 5.040±0.46 4.553±1.20 5.861±2.50 4.711±0.66 5.854±1.72 3.701±1.61 7.678±6.82 3.020±0.87
ENSMUST00000117812 2.221±0.87 3.830±0.19 3.372±0.53 1.273±0.36 2.597±1.04 5.849±1.26 N/A 1.798±0.36 2.603±1.06 2.182±0.06 2.409±0.88 3.225±1.12 7.098±1.83 0.723±0.31
ENSMUST00000119041 N/A N/A N/A N/A 1.563±0.00 N/A N/A N/A N/A N/A 1.991±0.18 8.847±0.52 13.405±2.64 N/A
ENSMUST00000126604 N/A N/A N/A 5.091±0.00 N/A N/A N/A N/A N/A N/A N/A 6.027±0.00 16.465±0.00 3.778±0.00
ENSMUST00000152649 7.876±4.66 41.434±9.65 N/A N/A 17.905±8.14 33.736±6.22 N/A 5.099±1.17 4.765±1.72 10.165±5.56 N/A 25.549±6.68 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A6 CIL_0003A6_0002 CGP 7:55841745-55962476
CIL_0006L7 CIL_0006L7_0002 CGP 7:55931287-56019954

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005769 IDA early endosome
GO:0005886 IDA plasma membrane
GO:0015095 IEA magnesium ion transmembrane transporter activity
GO:0015693 IEA:IDA magnesium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055912 nipa2 non imprinted in Prader-Willi/Angelman syndrome 2 (human) protein_coding Danio_rerio
ENSG00000140157 NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 protein_coding Homo_sapiens

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