C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: post-GPI attachment to proteins 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030990 Pgap2 10090 + 7:102210208-102238567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033292 Pgap2-003 102223069-102237763 protein_coding
  ENSMUST00000119816 Pgap2-024 102223085-102237733 nonsense_mediated_decay
  ENSMUST00000120119 Pgap2-007 102229999-102238560 protein_coding
  ENSMUST00000120879 Pgap2-029 102210362-102238567 protein_coding
  ENSMUST00000124619 Pgap2-004 102223071-102227111 retained_intron
  ENSMUST00000126914 Pgap2-016 102223053-102236233 protein_coding
  ENSMUST00000127804 Pgap2-011 102210535-102236461 retained_intron
  ENSMUST00000129340 Pgap2-006 102223050-102237777 nonsense_mediated_decay
  ENSMUST00000133311 Pgap2-028 102223072-102237662 processed_transcript
  ENSMUST00000134621 Pgap2-025 102235903-102237654 retained_intron
  ENSMUST00000137303 Pgap2-027 102235854-102237530 protein_coding
  ENSMUST00000138479 Pgap2-014 102223045-102237226 protein_coding
  ENSMUST00000138753 Pgap2-020 102223282-102236298 protein_coding
  ENSMUST00000140058 Pgap2-022 102225831-102237552 nonsense_mediated_decay
  ENSMUST00000140631 Pgap2-030 102210335-102226385 protein_coding
  ENSMUST00000142873 Pgap2-021 102225818-102236335 protein_coding
  ENSMUST00000143541 Pgap2-012 102222440-102236167 protein_coding
  ENSMUST00000143759 Pgap2-018 102223078-102236418 retained_intron
  ENSMUST00000145352 Pgap2-023 102223084-102237620 nonsense_mediated_decay
  ENSMUST00000146394 Pgap2-009 102210524-102221046 processed_transcript
  ENSMUST00000146559 Pgap2-017 102223075-102226354 protein_coding
  ENSMUST00000146996 Pgap2-010 102210372-102226445 protein_coding
  ENSMUST00000147536 Pgap2-008 102210208-102223483 processed_transcript
  ENSMUST00000150891 Pgap2-005 102223093-102238560 processed_transcript
  ENSMUST00000153020 Pgap2-013 102222644-102237228 protein_coding
  ENSMUST00000156529 Pgap2-002 102223028-102238567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000033292ENSMUST00000120119ENSMUST00000120879ENSMUST00000124619ENSMUST00000126914ENSMUST00000133311ENSMUST00000137303ENSMUST00000138479ENSMUST00000142873ENSMUST00000143759ENSMUST00000150891ENSMUST00000153020ENSMUST00000156529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000033292 17.334±3.86 23.283±5.37 8.337±0.95 N/A 15.346±3.34 22.769±5.78 10.883±1.43 6.967±2.57 6.335±1.48 18.714±2.94 3.985±0.82 18.512±3.47 N/A
ENSMUST00000120119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.966±1.42 N/A
ENSMUST00000120879 5.135±0.60 N/A 4.467±0.71 8.148±0.00 6.007±0.00 N/A 6.049±0.00 3.946±0.96 3.151±0.68 9.875±1.66 2.693±0.81 N/A 2.194±0.24
ENSMUST00000124619 N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126914 N/A 42.733±6.79 N/A N/A N/A 15.582±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133311 N/A N/A N/A N/A 15.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137303 17.729±0.52 42.087±2.32 N/A N/A 27.000±3.54 37.860±11.53 16.002±1.26 9.901±0.96 11.480±0.00 31.321±0.00 N/A 35.731±5.86 N/A
ENSMUST00000138479 N/A 38.107±5.58 N/A N/A 15.469±0.87 29.988±6.82 14.115±0.00 6.471±0.69 7.624±1.11 25.650±4.11 N/A 24.290±6.61 N/A
ENSMUST00000142873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.793±5.17 N/A
ENSMUST00000143759 N/A N/A N/A N/A N/A 44.093±0.00 N/A N/A 9.740±0.00 N/A N/A 28.634±7.04 N/A
ENSMUST00000150891 N/A N/A 5.863±0.44 N/A 4.584±0.00 N/A N/A N/A 2.651±0.00 N/A 4.198±1.10 15.857±0.00 4.323±0.05
ENSMUST00000153020 N/A N/A N/A N/A 16.498±0.00 N/A N/A N/A 12.723±0.08 N/A N/A 29.378±6.18 N/A
ENSMUST00000156529 4.501±0.00 16.588±3.04 4.115±0.70 N/A 7.190±0.00 9.178±1.48 6.494±3.08 3.053±0.55 4.643±1.37 N/A N/A N/A 2.899±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K9 CIL_0005K9_0002 CGP 7:102134204-102238567
CIL_0005KW CIL_0005KW_0002 CGP 7:102210208-102250123

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005515 IPI protein binding
GO:0005634 IMP nucleus
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006506 ISS GPI anchor biosynthetic process
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0008565 ISS protein transporter activity
GO:0008630 IGI intrinsic apoptotic signaling pathway in response to DNA damage
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0042770 IMP signal transduction in response to DNA damage
GO:0042771 IGI intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:1902230 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044596 pgap2 post-GPI attachment to proteins 2 protein_coding Danio_rerio
ENSG00000148985 PGAP2 post-GPI attachment to proteins 2 protein_coding Homo_sapiens

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