C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120879 Pgap2-029 ENSMUSG00000030990 10090 + 7:102210362-102238567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMusclePlacentaENSMUST00000120879
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Placenta
ENSMUST00000120879 5.135±0.60 4.467±0.71 8.148±0.00 6.007±0.00 6.049±0.00 3.946±0.96 3.151±0.68 9.875±1.66 2.693±0.81 2.194±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K9 CIL_0005K9_0002 CGP 7:102134204-102238567
CIL_0005KW CIL_0005KW_0002 CGP 7:102210208-102250123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005515 IPI protein binding
GO:0005634 IMP nucleus
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006506 ISS GPI anchor biosynthetic process
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0008565 ISS protein transporter activity
GO:0008630 IGI intrinsic apoptotic signaling pathway in response to DNA damage
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0042770 IMP signal transduction in response to DNA damage
GO:0042771 IGI intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:1902230 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278243 PGAP2-001 protein_coding Homo_sapiens 0 785
ENST00000300730 PGAP2-003 protein_coding Homo_sapiens 0 1050
ENST00000396986 PGAP2-002 protein_coding Homo_sapiens 0 994
ENST00000396991 PGAP2-201 protein_coding Homo_sapiens 0 756
ENST00000396993 PGAP2-029 protein_coding Homo_sapiens 0 756
ENST00000459679 PGAP2-008 protein_coding Homo_sapiens 0 652
ENST00000463452 PGAP2-049 protein_coding Homo_sapiens 0 994
ENST00000464229 PGAP2-009 protein_coding Homo_sapiens 0 811
ENST00000464261 PGAP2-010 protein_coding Homo_sapiens 0 652
ENST00000464441 PGAP2-017 protein_coding Homo_sapiens 0 481
ENST00000464590 PGAP2-026 retained_intron Homo_sapiens 1e-26 124
ENST00000464906 PGAP2-039 protein_coding Homo_sapiens 0 785
ENST00000465237 PGAP2-035 retained_intron Homo_sapiens 5e-31 139
ENST00000465307 PGAP2-041 protein_coding Homo_sapiens 0 756
ENST00000469307 PGAP2-024 protein_coding Homo_sapiens 0 1022
ENST00000475884 PGAP2-013 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000477358 PGAP2-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000478773 PGAP2-020 retained_intron Homo_sapiens 0 651
ENST00000479072 PGAP2-023 protein_coding Homo_sapiens 0 811
ENST00000483829 PGAP2-021 retained_intron Homo_sapiens 0.00005 53
ENST00000485602 PGAP2-012 retained_intron Homo_sapiens 4e-31 139
ENST00000487112 PGAP2-022 retained_intron Homo_sapiens 0 416
ENST00000489571 PGAP2-014 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000490830 PGAP2-011 protein_coding Homo_sapiens 0 414
ENST00000493547 PGAP2-015 protein_coding Homo_sapiens 0 652
ENST00000495026 PGAP2-016 retained_intron Homo_sapiens 0 514
ENST00000496834 PGAP2-019 protein_coding Homo_sapiens 0 758
ENST00000525937 PGAP2-048 retained_intron Homo_sapiens 1e-39 167
ENST00000527810 PGAP2-046 retained_intron Homo_sapiens 0 339
ENST00000528216 PGAP2-034 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000528526 PGAP2-047 retained_intron Homo_sapiens 0 399
ENST00000532017 PGAP2-040 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000532523 PGAP2-007 protein_coding Homo_sapiens 0 756

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