C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and calponin homology (CH) domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031290 Lrch2 10090 - X:147470375-147554081 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112819 Lrch2-201 147470387-147554050 protein_coding
  ENSMUST00000134265 Lrch2-003 147470387-147498165 retained_intron
  ENSMUST00000136789 Lrch2-001 147470380-147554081 protein_coding
  ENSMUST00000137665 Lrch2-002 147472813-147519063 protein_coding
  ENSMUST00000151730 Lrch2-005 147484680-147503470 processed_transcript
  ENSMUST00000152838 Lrch2-004 147470375-147512162 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112819ENSMUST00000134265ENSMUST00000136789ENSMUST00000137665ENSMUST00000151730ENSMUST00000152838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112819 0.613±0.38 1.415±0.50 2.747±1.42 2.831±0.02 0.173±0.12 0.316±0.13 0.145±0.04 0.147±0.05 0.072±0.06 0.273±0.10 0.055±0.04 1.173±0.45 0.839±0.67 0.147±0.06
ENSMUST00000134265 N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.027±0.00 N/A 0.017±0.00 N/A 0.014±0.00 N/A
ENSMUST00000136789 N/A N/A 2.822±0.00 N/A 0.022±0.00 N/A N/A N/A 0.009±0.00 N/A 0.013±0.00 1.161±0.00 0.033±0.00 N/A
ENSMUST00000137665 0.976±0.00 N/A N/A 3.549±0.00 0.068±0.00 N/A 0.271±0.00 0.102±0.02 0.069±0.02 N/A 0.056±0.00 6.375±0.00 0.416±0.16 0.270±0.09
ENSMUST00000151730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.597±0.00
ENSMUST00000152838 N/A N/A N/A 1.632±0.00 N/A N/A N/A 0.032±0.00 N/A N/A 0.102±0.06 1.035±0.20 0.110±0.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000178 CIL_000178_0003 CGP X:147383476-147554081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075580 lrch2 leucine-rich repeats and calponin homology (CH) domain containing 2 protein_coding Danio_rerio
ENSG00000130224 LRCH2 leucine-rich repeats and calponin homology (CH) domain containing 2 protein_coding Homo_sapiens

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