C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000178_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039436-ENSDARG00000075580 CGP 7955 5:38701556-38847817
GeneTranscriptPositionBiotype
ENSDARG00000075580 (lrch2)
leucine-rich repeats and calponin homology (CH) domain containing 2
ENSDART00000112312 (lrch2-201) 38732179-38847817 protein_coding
ENSDARG00000083229 (BX927261.2)
ENSDART00000118483 (BX927261.2-201) 38844641-38844744 miRNA
CIL_000178_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123496-ENSG00000130224 CGP 9606 X:115003975-115234072
GeneTranscriptPositionBiotype
ENSG00000123496 (IL13RA2)
interleukin 13 receptor, alpha 2
ENST00000243213 (IL13RA2-201) 115003977-115017644 protein_coding
ENST00000371936 (IL13RA2-001) 115003975-115018973 protein_coding
ENST00000468224 (IL13RA2-002) 115014526-115019977 processed_transcript
ENSG00000130224 (LRCH2)
leucine-rich repeats and calponin homology (CH) domain containing 2
ENST00000317135 (LRCH2-001) 115110616-115234072 protein_coding
ENST00000538422 (LRCH2-201) 115110626-115234072 protein_coding
ENSG00000175718 (RBMXL3)
RNA binding motif protein, X-linked-like 3
ENST00000424776 (RBMXL3-001) 115189427-115192868 protein_coding
ENSG00000271907 (SNORA35)
Small nucleolar RNA SNORA35
ENST00000607417 (SNORA35.1-202) 115126316-115126444 snoRNA
CIL_000178_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031289-ENSMUSG00000031290 CGP 10090 X:147383476-147554081
GeneTranscriptPositionBiotype
ENSMUSG00000031289 (Il13ra2)
interleukin 13 receptor, alpha 2
ENSMUST00000033646 (Il13ra2-001) 147383476-147429192 protein_coding
ENSMUST00000112827 (Il13ra2-201) 147383478-147403832 protein_coding
ENSMUSG00000031290 (Lrch2)
leucine-rich repeats and calponin homology (CH) domain containing 2
ENSMUST00000112819 (Lrch2-201) 147470387-147554050 protein_coding
ENSMUST00000134265 (Lrch2-003) 147470387-147498165 retained_intron
ENSMUST00000136789 (Lrch2-001) 147470380-147554081 protein_coding
ENSMUST00000137665 (Lrch2-002) 147472813-147519063 protein_coding
ENSMUST00000151730 (Lrch2-005) 147484680-147503470 processed_transcript
ENSMUST00000152838 (Lrch2-004) 147470375-147512162 protein_coding
ENSMUSG00000084421 (Gm25107)
predicted gene, 25107
ENSMUST00000122472 (Gm25107-201) 147484293-147484421 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000178_0001ENSDARG00000075580ENSDART00000112312ENSDARG00000083229ENSDART00000118483CIL_000178_0002ENSG00000123496ENST00000243213ENST00000371936ENST00000468224ENSG00000130224ENST00000317135ENST00000538422ENSG00000175718ENST00000424776ENSG00000271907ENST00000607417CIL_000178_0003ENSMUSG00000031289ENSMUST00000033646ENSMUST00000112827ENSMUSG00000031290ENSMUST00000112819ENSMUST00000134265ENSMUST00000136789ENSMUST00000137665ENSMUST00000151730ENSMUST00000152838ENSMUSG00000084421ENSMUST00000122472
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000178_0001ENSDARG00000075580ENSDART00000112312ENSDARG00000083229ENSDART00000118483CIL_000178_0002ENSG00000123496ENST00000243213ENST00000371936ENST00000468224ENSG00000130224ENST00000317135ENST00000538422ENSG00000175718ENST00000424776ENSG00000271907ENST00000607417CIL_000178_0003ENSMUSG00000031289ENSMUST00000033646ENSMUST00000112827ENSMUSG00000031290ENSMUST00000112819ENSMUST00000134265ENSMUST00000136789ENSMUST00000137665ENSMUST00000151730ENSMUST00000152838ENSMUSG00000084421ENSMUST00000122472
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000075580 ENSDART00000112312 N/A N/A N/A 0.565±0.53 N/A N/A 0.272±0.20 0.175±0.00 N/A N/A 0.103±0.00 N/A N/A N/A
ENSDARG00000083229 ENSDART00000118483 N/A N/A N/A 116.378±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123496 ENST00000243213 0.061±0.00 0.047±0.00 0.120±0.00 0.875±0.02 0.090±0.01 0.319±0.00 0.019±0.00 0.715±0.00 0.170±0.00 0.463±0.18 N/A 0.080±0.03 0.520±0.52 12.451±1.05
ENST00000371936 N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A
ENST00000468224 N/A 0.110±0.00 N/A N/A N/A N/A 0.042±0.00 N/A N/A 0.265±0.00 N/A 0.563±0.64 0.420±0.00 55.215±0.00
ENSG00000130224 ENST00000317135 1.258±0.00 0.932±0.00 0.154±0.00 1.600±0.00 1.023±0.40 1.420±0.98 0.308±0.03 0.466±0.29 5.042±0.00 1.737±0.00 N/A 1.283±0.67 0.979±0.54 1.962±0.23
ENST00000538422 N/A N/A N/A N/A 0.356±0.00 N/A N/A N/A 0.010±0.00 0.357±0.00 0.099±0.08 0.154±0.00 0.200±0.00 N/A
ENSG00000175718 ENST00000424776 N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.026±0.00 1.993±0.00
ENSG00000271907 ENST00000607417 N/A 0.512±0.00 110.359±0.00 1575.303±1574.92 3085.450±0.00 1228.430±0.00 1367.090±0.00 12.458±0.00 8169.600±0.00 4140.430±0.00 376.868±0.00 2640.780±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031289 ENSMUST00000033646 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A 0.005±0.00 N/A
ENSMUST00000112827 0.088±0.05 N/A 1.100±0.06 0.026±0.02 0.172±0.07 0.156±0.05 0.028±0.00 0.086±0.05 0.099±0.08 0.073±0.02 0.018±0.00 0.526±0.23 0.040±0.00 0.054±0.05
ENSMUSG00000031290 ENSMUST00000112819 0.613±0.38 1.415±0.50 2.747±1.42 2.831±0.02 0.173±0.12 0.316±0.13 0.145±0.04 0.147±0.05 0.072±0.06 0.273±0.10 0.055±0.04 1.173±0.45 0.839±0.67 0.147±0.06
ENSMUST00000134265 N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A 0.027±0.00 N/A 0.017±0.00 N/A 0.014±0.00 N/A
ENSMUST00000136789 N/A N/A 2.822±0.00 N/A 0.022±0.00 N/A N/A N/A 0.009±0.00 N/A 0.013±0.00 1.161±0.00 0.033±0.00 N/A
ENSMUST00000137665 0.976±0.00 N/A N/A 3.549±0.00 0.068±0.00 N/A 0.271±0.00 0.102±0.02 0.069±0.02 N/A 0.056±0.00 6.375±0.00 0.416±0.16 0.270±0.09
ENSMUST00000151730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.597±0.00
ENSMUST00000152838 N/A N/A N/A 1.632±0.00 N/A N/A N/A 0.032±0.00 N/A N/A 0.102±0.06 1.035±0.20 0.110±0.04 N/A
ENSMUSG00000084421 ENSMUST00000122472 N/A N/A N/A 38.919±0.00 N/A N/A N/A N/A N/A N/A N/A 21.891±10.13 14.647±0.00 N/A

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