C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein U
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031629 Cenpu 10090 + 8:46552055-46580007 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034045 Cenpu-001 46552060-46579584 protein_coding
  ENSMUST00000093518 Cenpu-002 46552087-46578368 protein_coding
  ENSMUST00000122838 Cenpu-005 46561728-46572830 retained_intron
  ENSMUST00000129371 Cenpu-006 46560077-46562457 processed_transcript
  ENSMUST00000135432 Cenpu-003 46552055-46580007 nonsense_mediated_decay
  ENSMUST00000136724 Cenpu-007 46573173-46578378 retained_intron
  ENSMUST00000153908 Cenpu-004 46552061-46556236 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000034045ENSMUST00000093518ENSMUST00000122838ENSMUST00000135432
Transcript ID Adrenal Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000034045 N/A 1.250±0.00 N/A 0.465±0.10 2.428±1.28 0.368±0.01 1.675±0.24 8.470±1.37
ENSMUST00000093518 N/A 1.612±0.00 N/A N/A N/A N/A 8.467±0.00 40.367±0.00
ENSMUST00000122838 0.646±0.18 N/A 0.607±0.00 1.264±0.36 N/A 2.056±0.63 N/A 8.032±0.06
ENSMUST00000135432 0.211±0.00 N/A 0.212±0.06 0.318±0.11 0.081±0.02 0.570±0.27 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097G CIL_00097G_0002 VISTA 8:46470571-47072246
CIL_00094W CIL_00094W_0002 VISTA 8:46548055-47151393

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005815 IEA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043009 IMP chordate embryonic development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086704 CU638740.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088924 CENPU (2 of 2) centromere protein U protein_coding Danio_rerio
ENSG00000151725 CENPU centromere protein U protein_coding Homo_sapiens

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