C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031666 Rbl2 10090 + 8:91070057-91123844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034091 Rbl2-001 91070057-91123844 protein_coding
  ENSMUST00000126689 Rbl2-007 91115129-91116087 retained_intron
  ENSMUST00000130336 Rbl2-006 91113654-91115766 retained_intron
  ENSMUST00000141351 Rbl2-002 91070094-91079959 retained_intron
  ENSMUST00000144190 Rbl2-003 91106534-91115104 retained_intron
  ENSMUST00000145246 Rbl2-004 91106571-91114049 processed_transcript
  ENSMUST00000147361 Rbl2-005 91112243-91115826 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034091ENSMUST00000144190ENSMUST00000147361
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034091 11.482±2.67 11.229±4.79 11.021±0.14 6.532±0.61 13.755±2.10 9.864±1.49 7.744±0.73 14.690±1.45 5.614±2.30 11.692±0.57 9.944±1.80 11.945±3.47 2.539±0.87 8.090±2.29
ENSMUST00000144190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.910±7.79
ENSMUST00000147361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.716±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007PV CIL_0007PV_0002 VISTA 8:90870647-91472060
CIL_0008IZ CIL_0008IZ_0002 VISTA 8:90885299-91486231
CIL_0007S1 CIL_0007S1_0002 VISTA 8:91005057-91606285
CIL_0007S0 CIL_0007S0_0002 VISTA 8:91042027-91642872
CIL_0005OB CIL_0005OB_0002 CGP 8:91070057-91134465

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification
GO:0043550 IEA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045636 rbl2 retinoblastoma-like 2 (p130) protein_coding Danio_rerio
ENSG00000103479 RBL2 retinoblastoma-like 2 protein_coding Homo_sapiens

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