C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034091 Rbl2-001 ENSMUSG00000031666 10090 + 8:91070057-91123844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034091 11.482±2.67 11.229±4.79 11.021±0.14 6.532±0.61 13.755±2.10 9.864±1.49 7.744±0.73 14.690±1.45 5.614±2.30 11.692±0.57 9.944±1.80 11.945±3.47 2.539±0.87 8.090±2.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007PV CIL_0007PV_0002 VISTA 8:90870647-91472060
CIL_0008IZ CIL_0008IZ_0002 VISTA 8:90885299-91486231
CIL_0007S1 CIL_0007S1_0002 VISTA 8:91005057-91606285
CIL_0007S0 CIL_0007S0_0002 VISTA 8:91042027-91642872
CIL_0005OB CIL_0005OB_0002 CGP 8:91070057-91134465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification
GO:0043550 IEA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262133 RBL2-001 protein_coding Homo_sapiens 0 3923
ENST00000379935 RBL2-010 processed_transcript Homo_sapiens 0 2760
ENST00000394657 AKTIP-001 protein_coding Homo_sapiens 0 220
ENST00000544405 RBL2-002 protein_coding Homo_sapiens 0 2139
ENST00000544545 RBL2-201 protein_coding Homo_sapiens 0 2760
ENST00000561512 RBL2-007 retained_intron Homo_sapiens 0 433
ENST00000562837 RBL2-009 retained_intron Homo_sapiens 0 451
ENST00000562850 RBL2-008 retained_intron Homo_sapiens 0 296
ENST00000564605 RBL2-006 retained_intron Homo_sapiens 0 311
ENST00000567964 RBL2-004 protein_coding Homo_sapiens 0 695

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