C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 4a (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031913 Vps4a 10090 + 8:107031222-107045755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034388 Vps4a-001 107031222-107045755 protein_coding
  ENSMUST00000132096 Vps4a-003 107042255-107043106 retained_intron
  ENSMUST00000144527 Vps4a-002 107039019-107042687 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034388 19.997±5.03 25.405±1.51 19.467±1.02 37.327±1.93 20.601±7.87 17.069±1.69 18.678±1.31 18.830±1.77 9.308±2.09 17.850±0.71 23.993±3.29 20.921±3.63 19.392±4.09 58.505±13.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YA CIL_0004YA_0003 CGP 8:106935750-107045755

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0008152 IEA metabolic process
GO:0009838 ISS abscission
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016787 IEA hydrolase activity
GO:0030496 ISS midbody
GO:0031565 ISS cytokinesis checkpoint
GO:0032466 ISS negative regulation of cytokinesis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030114 vps4a vacuolar protein sorting 4a (yeast) protein_coding Danio_rerio
ENSG00000132612 VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) protein_coding Homo_sapiens
ENSG00000260914 RP11-343C2.11 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000461295} protein_coding Homo_sapiens

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