C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 4a (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034388 Vps4a-001 ENSMUSG00000031913 10090 + 8:107031222-107045755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034388 19.997±5.03 25.405±1.51 19.467±1.02 37.327±1.93 20.601±7.87 17.069±1.69 18.678±1.31 18.830±1.77 9.308±2.09 17.850±0.71 23.993±3.29 20.921±3.63 19.392±4.09 58.505±13.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YA CIL_0004YA_0003 CGP 8:106935750-107045755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0008152 IEA metabolic process
GO:0009838 ISS abscission
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016787 IEA hydrolase activity
GO:0030496 ISS midbody
GO:0031565 ISS cytokinesis checkpoint
GO:0032466 ISS negative regulation of cytokinesis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254950 VPS4A-002 protein_coding Homo_sapiens 0 1766
ENST00000566354 VPS4A-001 retained_intron Homo_sapiens 0 305
ENST00000570054 RP11-343C2.11-001 protein_coding Homo_sapiens 0 1454

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