C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004YA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000051763-ENSDARG00000030114 CGP 7955 25:35979286-36008561
GeneTranscriptPositionBiotype
ENSDARG00000030114 (vps4a)
vacuolar protein sorting 4a (yeast) 		ENSDART00000042678 (vps4a-201) 36003708-36008561 protein_coding
ENSDARG00000051763 (SNTB2)
syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) 		ENSDART00000073441 (SNTB2-001) 35979286-36001867 protein_coding
CIL_0004YA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168807-ENSG00000260914 CGP 9606 16:69187129-69322700
GeneTranscriptPositionBiotype
ENSG00000132612 (VPS4A)
vacuolar protein sorting 4 homolog A (S. cerevisiae) 		ENST00000254950 (VPS4A-002) 69311356-69326939 protein_coding
ENST00000562754 (VPS4A-004) 69319489-69321116 retained_intron
ENST00000564399 (VPS4A-003) 69321093-69322270 processed_transcript
ENST00000566354 (VPS4A-001) 69321211-69325046 retained_intron
ENSG00000141076 (CIRH1A)
cirrhosis, autosomal recessive 1A (cirhin) 		ENST00000314423 (CIRH1A-001) 69132515-69169021 protein_coding
ENST00000352319 (CIRH1A-003) 69132650-69169020 protein_coding
ENST00000562237 (CIRH1A-004) 69132596-69169020 protein_coding
ENST00000563094 (CIRH1A-002) 69132658-69167842 protein_coding
ENST00000563299 (CIRH1A-006) 69131291-69139903 protein_coding
ENST00000564408 (CIRH1A-014) 69139672-69150634 retained_intron
ENST00000566227 (CIRH1A-010) 69132646-69143389 protein_coding
ENST00000567015 (CIRH1A-011) 69133511-69143300 retained_intron
ENST00000567235 (CIRH1A-007) 69132873-69139832 protein_coding
ENST00000567287 (CIRH1A-017) 69167104-69231130 processed_transcript
ENST00000567460 (CIRH1A-009) 69132613-69143328 protein_coding
ENST00000567500 (CIRH1A-016) 69154422-69169038 protein_coding
ENST00000568448 (CIRH1A-008) 69132884-69139873 protein_coding
ENST00000569014 (CIRH1A-013) 69139012-69150702 processed_transcript
ENST00000569615 (CIRH1A-015) 69142116-69150818 processed_transcript
ENST00000569800 (CIRH1A-012) 69132663-69138026 retained_intron
ENSG00000168807 (SNTB2)
syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) 		ENST00000336278 (SNTB2-001) 69187129-69309052 protein_coding
ENST00000360496 (SNTB2-004) 69187585-69260101 protein_coding
ENST00000467311 (SNTB2-002) 69187147-69300981 nonsense_mediated_decay
ENST00000524887 (SNTB2-003) 69187561-69260100 nonsense_mediated_decay
ENST00000525632 (SNTB2-007) 69187561-69270200 protein_coding
ENST00000528525 (SNTB2-006) 69187642-69270181 processed_transcript
ENSG00000200164 (Y_RNA)
Y RNA 		ENST00000363294 (Y_RNA.1-317) 69191123-69191223 misc_RNA
ENSG00000260914 (RP11-343C2.11)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000461295} 		ENST00000570054 (RP11-343C2.11-001) 69299682-69322700 protein_coding
ENSG00000265113 (RP11-70O5.2)
 ENST00000562422 (RP11-70O5.2-001) 69240549-69241929 sense_intronic
CIL_0004YA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041308-ENSMUSG00000031913 CGP 10090 8:106935750-107045755
GeneTranscriptPositionBiotype
ENSMUSG00000031913 (Vps4a)
vacuolar protein sorting 4a (yeast) 		ENSMUST00000034388 (Vps4a-001) 107031222-107045755 protein_coding
ENSMUST00000132096 (Vps4a-003) 107042255-107043106 retained_intron
ENSMUST00000144527 (Vps4a-002) 107039019-107042687 retained_intron
ENSMUSG00000041308 (Sntb2)
syntrophin, basic 2 		ENSMUST00000047425 (Sntb2-201) 106935750-107014192 protein_coding
ENSMUSG00000078931 (Pdf)
peptide deformylase (mitochondrial) 		ENSMUST00000055316 (Pdf-002) 107046520-107048614 protein_coding
ENSMUST00000154271 (Pdf-001) 107044698-107047186 nonsense_mediated_decay
ENSMUSG00000083734 (Gm16209)
predicted gene 16209 		ENSMUST00000118457 (Gm16209-001) 107037480-107038106 processed_pseudogene
ENSMUSG00000085464 (Gm16208)
predicted gene 16208 		ENSMUST00000128476 (Gm16208-001) 107029675-107031188 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YA_0001ENSDARG00000030114ENSDART00000042678ENSDARG00000051763ENSDART00000073441CIL_0004YA_0002ENSG00000132612ENST00000254950ENST00000562754ENST00000564399ENST00000566354ENSG00000141076ENST00000314423ENST00000352319ENST00000562237ENST00000563094ENST00000563299ENST00000564408ENST00000566227ENST00000567015ENST00000567235ENST00000567287ENST00000567460ENST00000567500ENST00000568448ENST00000569014ENST00000569615ENST00000569800ENSG00000168807ENST00000336278ENST00000360496ENST00000467311ENST00000524887ENST00000525632ENST00000528525ENSG00000200164ENST00000363294ENSG00000260914ENST00000570054ENSG00000265113ENST00000562422CIL_0004YA_0003ENSMUSG00000031913ENSMUST00000034388ENSMUST00000132096ENSMUST00000144527ENSMUSG00000041308ENSMUST00000047425ENSMUSG00000078931ENSMUST00000055316ENSMUST00000154271ENSMUSG00000083734ENSMUST00000118457ENSMUSG00000085464ENSMUST00000128476
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YA_0001ENSDARG00000030114ENSDART00000042678ENSDARG00000051763ENSDART00000073441CIL_0004YA_0002ENSG00000132612ENST00000254950ENST00000566354ENSG00000141076ENST00000314423ENST00000562237ENSG00000168807ENST00000336278ENSG00000200164ENST00000363294ENSG00000260914ENST00000570054ENSG00000265113ENST00000562422CIL_0004YA_0003ENSMUSG00000031913ENSMUST00000034388ENSMUSG00000041308ENSMUST00000047425ENSMUSG00000078931ENSMUST00000055316ENSMUSG00000083734ENSMUST00000118457ENSMUSG00000085464ENSMUST00000128476
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030114 ENSDART00000042678 N/A N/A N/A 9.268±8.96 N/A N/A 1.275±0.00 1.193±0.00 1.151±0.00 N/A 6.083±0.00 N/A N/A N/A
ENSDARG00000051763 ENSDART00000073441 N/A N/A N/A 4.018±1.40 N/A N/A 11.217±6.37 6.893±3.02 0.463±0.00 N/A 1.814±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132612 ENST00000254950 N/A 35.875±0.00 6.141±0.00 14.139±8.83 18.058±12.51 6.028±0.00 5.963±3.25 20.154±16.86 16.382±0.00 9.095±4.69 4.193±0.00 20.647±6.81 18.089±8.14 27.205±12.92
ENST00000562754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566354 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.289±0.00 N/A N/A N/A N/A
ENSG00000141076 ENST00000314423 12.618±0.00 N/A N/A 12.051±0.00 7.224±5.62 8.982±5.78 4.818±4.19 13.815±0.00 2.970±1.05 2.155±0.00 20.965±0.00 13.880±8.05 7.446±0.00 21.731±9.32
ENST00000352319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562237 N/A 10.990±0.00 N/A N/A 1.407±0.00 N/A N/A 2.477±0.00 6.025±0.00 5.075±0.00 13.304±9.17 7.447±3.23 10.623±1.70 21.136±0.00
ENST00000563094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168807 ENST00000336278 7.762±0.00 9.375±0.00 4.234±0.00 2.922±0.71 9.702±0.00 4.666±0.28 2.391±0.59 8.730±0.00 12.861±0.00 4.138±1.20 1.275±0.00 5.498±1.43 3.110±0.37 4.415±0.00
ENST00000360496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200164 ENST00000363294 0.191±0.00 0.755±0.00 N/A 0.367±0.00 0.536±0.00 N/A N/A N/A N/A N/A N/A 1.819±0.00 N/A 0.672±0.00
ENSG00000260914 ENST00000570054 N/A N/A N/A 42.288±27.45 N/A N/A N/A N/A N/A N/A N/A N/A 52.990±31.64 N/A
ENSG00000265113 ENST00000562422 N/A 0.310±0.00 N/A 0.096±0.00 0.088±0.00 0.021±0.00 0.045±0.00 0.092±0.00 N/A 0.020±0.00 N/A 0.098±0.00 N/A 0.110±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031913 ENSMUST00000034388 19.997±5.03 25.405±1.51 19.467±1.02 37.327±1.93 20.601±7.87 17.069±1.69 18.678±1.31 18.830±1.77 9.308±2.09 17.850±0.71 23.993±3.29 20.921±3.63 19.392±4.09 58.505±13.95
ENSMUST00000132096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041308 ENSMUST00000047425 5.995±3.23 10.017±1.13 5.371±0.00 1.001±0.09 8.951±1.25 3.339±0.56 2.280±0.23 5.011±0.60 0.843±0.24 8.376±0.60 0.739±0.11 11.861±5.18 1.193±0.50 6.944±3.33
ENSMUSG00000078931 ENSMUST00000055316 14.696±0.80 81.837±16.19 13.600±1.30 N/A 26.802±1.29 19.166±4.26 27.407±1.74 17.188±3.44 12.749±3.70 19.202±7.31 20.086±1.07 43.605±10.78 12.437±3.13 N/A
ENSMUST00000154271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083734 ENSMUST00000118457 0.612±0.13 0.377±0.14 0.506±0.08 1.003±0.54 0.719±0.65 0.530±0.27 0.399±0.21 0.375±0.09 0.273±0.09 0.749±0.33 0.156±0.12 0.651±0.51 0.232±0.08 0.297±0.17
ENSMUSG00000085464 ENSMUST00000128476 0.211±0.10 N/A 0.052±0.03 0.093±0.03 0.104±0.00 0.188±0.00 0.093±0.00 0.093±0.00 0.122±0.02 0.140±0.00 N/A 0.203±0.12 0.194±0.12 4.334±0.78

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