C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lactate dehydrogenase D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031958 Ldhd 10090 - 8:111623785-111630374 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070004 Ldhd-001 111626271-111630374 protein_coding
  ENSMUST00000173521 Ldhd-003 111625503-111630335 retained_intron
  ENSMUST00000173909 Ldhd-002 111623785-111628587 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000070004ENSMUST00000173521ENSMUST00000173909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000070004 21.337±8.40 37.203±11.20 N/A N/A 24.031±1.73 N/A 20.451±2.08 159.004±23.31 79.009±32.98 N/A 16.431±1.68 13.939±3.99 1.616±0.00
ENSMUST00000173521 N/A N/A N/A N/A N/A N/A N/A 32.761±2.19 16.610±2.33 N/A N/A N/A N/A
ENSMUST00000173909 7.552±0.93 11.496±2.29 7.206±1.11 19.499±2.84 10.262±0.89 5.191±0.19 6.643±0.23 N/A 1.849±0.32 9.086±0.58 6.257±0.39 13.902±1.88 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PH CIL_0002PH_0002 CGP 8:111448784-111626030
CIL_0004Y8 CIL_0004Y8_0003 CGP 8:111536097-111630374
CIL_00048C CIL_00048C_0002 CGP 8:111623785-111671008

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004458 IEA D-lactate dehydrogenase (cytochrome) activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006754 NAS ATP biosynthetic process
GO:0008720 NAS D-lactate dehydrogenase activity
GO:0008762 IEA UDP-N-acetylmuramate dehydrogenase activity
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038845 ldhd lactate dehydrogenase D protein_coding Danio_rerio
ENSG00000166816 LDHD lactate dehydrogenase D protein_coding Homo_sapiens

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