C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: platelet-derived growth factor, D polypeptide
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032006 Pdgfd 10090 + 9:6168612-6378843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058692 Pdgfd-201 6168661-6378843 protein_coding
  ENSMUST00000168039 Pdgfd-202 6168612-6377519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058692ENSMUST00000168039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058692 2.061±1.02 4.427±1.66 9.246±0.88 0.111±0.07 0.946±0.30 0.466±0.13 0.808±0.31 0.928±0.45 0.129±0.06 2.696±0.14 0.344±0.20 2.382±1.60 0.384±0.17 0.362±0.11
ENSMUST00000168039 6.541±1.43 10.348±3.18 N/A 0.355±0.21 2.109±1.00 1.334±0.63 1.665±0.46 2.292±0.80 0.218±0.14 4.264±0.38 0.206±0.00 4.722±1.26 0.311±0.18 1.418±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002I3 CIL_0002I3_0002 CGP 9:6168612-6378843

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005161 ISO platelet-derived growth factor receptor binding
GO:0005615 ISO extracellular space
GO:0007275 IEA multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0009987 ISO cellular process
GO:0016020 IEA membrane
GO:0048008 IEA platelet-derived growth factor receptor signaling pathway
GO:0050730 IDA regulation of peptidyl-tyrosine phosphorylation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IEA extracellular vesicular exosome
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077677 CABZ01114098.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000170962 PDGFD platelet derived growth factor D protein_coding Homo_sapiens

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