C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-derived growth factor, D polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168039 Pdgfd-202 ENSMUSG00000032006 10090 + 9:6168612-6377519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168039
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168039 6.541±1.43 10.348±3.18 0.355±0.21 2.109±1.00 1.334±0.63 1.665±0.46 2.292±0.80 0.218±0.14 4.264±0.38 0.206±0.00 4.722±1.26 0.311±0.18 1.418±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002I3 CIL_0002I3_0002 CGP 9:6168612-6378843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005161 ISO platelet-derived growth factor receptor binding
GO:0005615 ISO extracellular space
GO:0007275 IEA multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0009987 ISO cellular process
GO:0016020 IEA membrane
GO:0048008 IEA platelet-derived growth factor receptor signaling pathway
GO:0050730 IDA regulation of peptidyl-tyrosine phosphorylation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IEA extracellular vesicular exosome
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302251 PDGFD-002 protein_coding Homo_sapiens 0 1125
ENST00000393158 PDGFD-001 protein_coding Homo_sapiens 0 1242
ENST00000529268 PDGFD-003 protein_coding Homo_sapiens 0 459

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