C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA pseudouridylate synthase domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032044 Rpusd4 10090 + 9:35267865-35277731 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034543 Rpusd4-001 35267865-35275965 protein_coding
  ENSMUST00000130552 Rpusd4-002 35272291-35275210 retained_intron
  ENSMUST00000144582 Rpusd4-004 35275197-35277731 nonsense_mediated_decay
  ENSMUST00000146571 Rpusd4-003 35272647-35273762 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034543ENSMUST00000130552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034543 3.218±0.42 2.310±1.26 5.280±0.07 4.446±1.16 3.420±1.33 4.094±1.82 3.470±0.38 4.367±1.23 4.683±2.62 4.027±0.64 3.780±0.18 5.859±2.89 9.155±2.45 1.822±0.32
ENSMUST00000130552 N/A N/A N/A N/A 1.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012674 rpusd4 RNA pseudouridylate synthase domain containing 4 protein_coding Danio_rerio
ENSG00000165526 RPUSD4 RNA pseudouridylate synthase domain containing 4 protein_coding Homo_sapiens

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