C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA pseudouridylate synthase domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034543 Rpusd4-001 ENSMUSG00000032044 10090 + 9:35267865-35275965 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034543 3.218±0.42 2.310±1.26 5.280±0.07 4.446±1.16 3.420±1.33 4.094±1.82 3.470±0.38 4.367±1.23 4.683±2.62 4.027±0.64 3.780±0.18 5.859±2.89 9.155±2.45 1.822±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298317 RPUSD4-001 protein_coding Homo_sapiens 0 1068
ENST00000525812 RPUSD4-005 retained_intron Homo_sapiens 0 429
ENST00000526942 RPUSD4-003 retained_intron Homo_sapiens 0 523
ENST00000530036 RPUSD4-008 processed_transcript Homo_sapiens 0 276
ENST00000532674 RPUSD4-006 protein_coding Homo_sapiens 0 414
ENST00000532800 RPUSD4-007 retained_intron Homo_sapiens 0 523
ENST00000533628 RPUSD4-002 protein_coding Homo_sapiens 0 588
ENST00000534393 RPUSD4-004 processed_transcript Homo_sapiens 0 590

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