C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: archain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032096 Arcn1 10090 - 9:44741564-44767845 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034607 Arcn1-001 44741564-44767845 protein_coding
  ENSMUST00000125164 Arcn1-003 44756027-44760092 processed_transcript
  ENSMUST00000150160 Arcn1-002 44755108-44767798 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034607ENSMUST00000125164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034607 36.639±6.59 35.415±5.06 30.099±0.60 21.708±7.56 31.295±3.64 40.934±4.56 17.579±0.91 30.736±1.39 27.702±4.58 30.512±3.60 19.655±0.78 43.593±11.85 44.562±11.02 13.074±5.08
ENSMUST00000125164 N/A N/A N/A 23.550±0.00 N/A N/A N/A N/A N/A N/A N/A 53.919±0.00 74.750±0.00 30.974±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192
CIL_0003MD CIL_0003MD_0003 CGP 9:44686304-44767845

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0008344 IMP adult locomotory behavior
GO:0016020 IEA membrane
GO:0021691 IMP cerebellar Purkinje cell layer maturation
GO:0030126 IEA COPI vesicle coat
GO:0030131 IEA clathrin adaptor complex
GO:0030137 IDA COPI-coated vesicle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043473 IMP pigmentation
GO:0044822 IEA poly(A) RNA binding
GO:0048193 IMP Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002792 arcn1a archain 1a protein_coding Danio_rerio
ENSDARG00000031214 arcn1b archain 1b protein_coding Danio_rerio
ENSG00000095139 ARCN1 archain 1 protein_coding Homo_sapiens

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