C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: archain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034607 Arcn1-001 ENSMUSG00000032096 10090 - 9:44741564-44767845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034607 36.639±6.59 35.415±5.06 30.099±0.60 21.708±7.56 31.295±3.64 40.934±4.56 17.579±0.91 30.736±1.39 27.702±4.58 30.512±3.60 19.655±0.78 43.593±11.85 44.562±11.02 13.074±5.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192
CIL_0003MD CIL_0003MD_0003 CGP 9:44686304-44767845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0008344 IMP adult locomotory behavior
GO:0016020 IEA membrane
GO:0021691 IMP cerebellar Purkinje cell layer maturation
GO:0030126 IEA COPI vesicle coat
GO:0030131 IEA clathrin adaptor complex
GO:0030137 IDA COPI-coated vesicle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043473 IMP pigmentation
GO:0044822 IEA poly(A) RNA binding
GO:0048193 IMP Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264028 ARCN1-001 protein_coding Homo_sapiens 0 2431
ENST00000359415 ARCN1-003 protein_coding Homo_sapiens 0 2399
ENST00000392859 ARCN1-004 protein_coding Homo_sapiens 0 2025
ENST00000534182 ARCN1-002 protein_coding Homo_sapiens 0 540
ENST00000614498 ARCN1-201 protein_coding Homo_sapiens 0 789

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