C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: archain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095139 ARCN1 9606 + 11:118572390-118603033 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264028 ARCN1-001 118572453-118602928 protein_coding
  ENST00000359415 ARCN1-003 118572424-118602928 protein_coding
  ENST00000392859 ARCN1-004 118572390-118600993 protein_coding
  ENST00000534182 ARCN1-002 118572436-118603033 protein_coding
  ENST00000614498 ARCN1-201 118572424-118602927 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264028ENST00000392859ENST00000534182ENST00000614498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264028 22.862±0.00 6.499±0.00 2.804±0.00 8.546±1.63 6.740±2.01 8.129±3.23 5.964±3.38 12.301±5.16 9.477±1.44 10.926±0.32 6.609±3.30 21.237±6.64 22.059±1.74 20.401±0.88
ENST00000392859 21.743±0.00 9.548±0.00 3.809±0.00 10.823±4.16 11.893±0.18 12.197±2.90 6.922±1.57 5.251±0.00 7.659±0.00 10.089±0.47 3.312±2.33 21.777±9.32 29.323±0.00 20.952±8.01
ENST00000534182 17.790±0.00 17.260±0.00 N/A 12.370±0.00 9.223±0.00 15.848±0.00 N/A 18.780±0.00 13.680±0.00 14.840±0.00 6.427±0.00 18.823±1.71 11.685±0.62 19.504±0.00
ENST00000614498 N/A N/A N/A 4.352±0.00 5.004±0.24 N/A 7.506±0.00 N/A 5.287±0.00 N/A N/A 7.185±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0001 VISTA 11:118137591-118740525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0008344 IEA adult locomotory behavior
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0021691 IEA cerebellar Purkinje cell layer maturation
GO:0030126 ISS COPI vesicle coat
GO:0030131 IEA clathrin adaptor complex
GO:0030137 IEA COPI-coated vesicle
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043473 IEA pigmentation
GO:0044822 IDA poly(A) RNA binding
GO:0048193 IEA Golgi vesicle transport
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002792 arcn1a archain 1a protein_coding Danio_rerio
ENSDARG00000031214 arcn1b archain 1b protein_coding Danio_rerio
ENSMUSG00000032096 Arcn1 archain 1 protein_coding Mus_musculus

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