C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cingulin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032232 Cgnl1 10090 - 9:71626509-71771602 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072899 Cgnl1-201 71626509-71771602 protein_coding
  ENSMUST00000121322 Cgnl1-003 71626509-71771602 protein_coding
  ENSMUST00000122065 Cgnl1-001 71629211-71771560 protein_coding
  ENSMUST00000136044 Cgnl1-002 71630338-71631330 retained_intron
  ENSMUST00000146567 Cgnl1-005 71632633-71648350 processed_transcript
  ENSMUST00000152224 Cgnl1-004 71628859-71631109 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072899ENSMUST00000121322ENSMUST00000122065ENSMUST00000136044ENSMUST00000152224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072899 8.950±3.01 2.218±1.06 3.230±0.66 1.797±0.76 3.595±0.80 2.634±0.21 3.128±0.36 30.971±2.31 3.582±2.43 11.147±0.53 0.691±0.16 6.155±4.85 19.592±8.51 2.384±0.38
ENSMUST00000121322 N/A 3.046±1.01 N/A N/A N/A 1.736±0.22 N/A N/A N/A N/A N/A N/A 17.904±0.00 N/A
ENSMUST00000122065 N/A 1.511±0.31 N/A 3.686±0.00 N/A 0.702±0.00 N/A N/A N/A N/A N/A 33.772±0.00 30.704±17.27 7.756±0.00
ENSMUST00000136044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.856±0.00
ENSMUST00000152224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.371±6.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004P0 CIL_0004P0_0002 CGP 9:71504347-71771602
CIL_0004OZ CIL_0004OZ_0002 CGP 9:71626509-72111871

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003774 IEA motor activity
GO:0005923 IDA tight junction
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0015629 IDA actin cytoskeleton
GO:0016459 IEA myosin complex
GO:0043296 IDA apical junction complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015805 cgnl1 cingulin-like 1 protein_coding Danio_rerio
ENSG00000128849 CGNL1 cingulin-like 1 protein_coding Homo_sapiens

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