C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nei endonuclease VIII-like 1 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032298 Neil1 10090 - 9:57142800-57148305 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034842 Neil1-201 57143256-57147034 protein_coding
  ENSMUST00000186410 Neil1-001 57143070-57148305 protein_coding
  ENSMUST00000190245 Neil1-002 57142800-57148127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034842ENSMUST00000186410ENSMUST00000190245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034842 N/A 2.561±1.00 N/A N/A N/A 1.775±0.00 N/A N/A N/A N/A 0.806±0.13 2.763±1.01 N/A 0.165±0.00
ENSMUST00000186410 N/A 1.325±0.00 N/A 0.454±0.00 2.095±0.00 1.074±0.00 N/A 1.238±0.00 0.585±0.31 N/A N/A 1.189±0.13 0.480±0.09 N/A
ENSMUST00000190245 5.331±0.78 4.208±0.70 5.775±0.45 3.299±0.30 5.483±1.22 3.143±0.88 1.977±0.64 4.898±0.95 2.126±0.86 3.373±0.55 2.662±0.92 3.150±1.42 2.736±0.35 0.222±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FZ CIL_0000FZ_0002 CGP 9:57130690-57148305
CIL_00045U CIL_00045U_0002 CGP 9:57142800-57158299

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003684 IEA damaged DNA binding
GO:0003906 IEA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006281 IDA DNA repair
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006979 IEA response to oxidative stress
GO:0008022 IEA protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0016829 IDA lyase activity
GO:0019104 IDA DNA N-glycosylase activity
GO:0032074 IEA negative regulation of nuclease activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018061 neil1 nei endonuclease VIII-like 1 (E. coli) protein_coding Danio_rerio
ENSG00000140398 NEIL1 nei endonuclease VIII-like 1 (E. coli) protein_coding Homo_sapiens

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