C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nei endonuclease VIII-like 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190245 Neil1-002 ENSMUSG00000032298 10090 - 9:57142800-57148127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190245 5.331±0.78 4.208±0.70 5.775±0.45 3.299±0.30 5.483±1.22 3.143±0.88 1.977±0.64 4.898±0.95 2.126±0.86 3.373±0.55 2.662±0.92 3.150±1.42 2.736±0.35 0.222±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FZ CIL_0000FZ_0002 CGP 9:57130690-57148305
CIL_00045U CIL_00045U_0002 CGP 9:57142800-57158299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003684 IEA damaged DNA binding
GO:0003906 IEA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006281 IDA DNA repair
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006979 IEA response to oxidative stress
GO:0008022 IEA protein C-terminus binding
GO:0008270 IEA zinc ion binding
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0016829 IDA lyase activity
GO:0019104 IDA DNA N-glycosylase activity
GO:0032074 IEA negative regulation of nuclease activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355059 NEIL1-001 protein_coding Homo_sapiens 0 1013
ENST00000450253 EIF4E-001 protein_coding Homo_sapiens 0.0002 55
ENST00000561643 NEIL1-002 retained_intron Homo_sapiens 0 745
ENST00000564257 NEIL1-017 protein_coding Homo_sapiens 0 392
ENST00000564738 NEIL1-020 retained_intron Homo_sapiens 0 372
ENST00000564784 NEIL1-003 protein_coding Homo_sapiens 0 1013
ENST00000564951 NEIL1-012 retained_intron Homo_sapiens 0 424
ENST00000565051 NEIL1-016 protein_coding Homo_sapiens 0 424
ENST00000565121 NEIL1-005 retained_intron Homo_sapiens 0 209
ENST00000566313 NEIL1-008 protein_coding Homo_sapiens 0 196
ENST00000566752 NEIL1-007 protein_coding Homo_sapiens 0 244
ENST00000567005 NEIL1-018 protein_coding Homo_sapiens 0 425
ENST00000567393 NEIL1-023 retained_intron Homo_sapiens 0 272
ENST00000567547 NEIL1-021 retained_intron Homo_sapiens 0 327
ENST00000567657 NEIL1-014 protein_coding Homo_sapiens 0 573
ENST00000568059 NEIL1-009 protein_coding Homo_sapiens 0 307
ENST00000568519 NEIL1-013 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000569035 NEIL1-004 protein_coding Homo_sapiens 0 1013
ENST00000569506 NEIL1-019 protein_coding Homo_sapiens 0 296

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