C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 30A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032328 Tmem30a 10090 - 9:79768943-79793507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034878 Tmem30a-001 79768943-79793430 protein_coding
  ENSMUST00000120690 Tmem30a-002 79768943-79793507 protein_coding
  ENSMUST00000130419 Tmem30a-004 79776854-79793430 retained_intron
  ENSMUST00000153815 Tmem30a-003 79772552-79793430 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034878ENSMUST00000120690ENSMUST00000130419ENSMUST00000153815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034878 6.795±0.36 N/A 21.057±1.57 26.812±14.77 3.852±0.65 3.532±0.52 5.325±0.99 8.644±2.11 14.198±5.10 12.232±4.90 18.133±2.55 22.028±13.17 23.368±4.42 5.834±1.89
ENSMUST00000120690 N/A N/A N/A N/A 4.436±0.34 N/A N/A N/A N/A 4.801±0.00 N/A N/A N/A 6.067±1.63
ENSMUST00000130419 20.309±4.65 60.739±9.75 N/A N/A 23.606±11.61 27.008±2.20 8.638±0.69 21.215±8.47 23.579±1.97 38.000±14.16 N/A 31.121±6.48 N/A 27.336±1.45
ENSMUST00000153815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.469±0.00 4.211±0.34 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000623 CIL_000623_0003 CGP 9:79755241-79793507
CIL_000622 CIL_000622_0003 CGP 9:79768943-79977804

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006855 IEA drug transmembrane transport
GO:0010976 IDA positive regulation of neuron projection development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IEA protein localization to endosome
GO:0045332 IMP phospholipid translocation
GO:0070863 IEA positive regulation of protein exit from endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030236 tmem30aa transmembrane protein 30Aa protein_coding Danio_rerio
ENSDARG00000043555 tmem30ab transmembrane protein 30Ab protein_coding Danio_rerio
ENSG00000112697 TMEM30A transmembrane protein 30A protein_coding Homo_sapiens

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