C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 30A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034878 Tmem30a-001 ENSMUSG00000032328 10090 - 9:79768943-79793430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034878
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034878 6.795±0.36 21.057±1.57 26.812±14.77 3.852±0.65 3.532±0.52 5.325±0.99 8.644±2.11 14.198±5.10 12.232±4.90 18.133±2.55 22.028±13.17 23.368±4.42 5.834±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000623 CIL_000623_0003 CGP 9:79755241-79793507
CIL_000622 CIL_000622_0003 CGP 9:79768943-79977804

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006855 IEA drug transmembrane transport
GO:0010976 IDA positive regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IEA protein localization to endosome
GO:0045332 IMP phospholipid translocation
GO:0070863 IEA positive regulation of protein exit from endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230461 TMEM30A-002 protein_coding Homo_sapiens 0 1797
ENST00000370050 TMEM30A-003 protein_coding Homo_sapiens 0 1476
ENST00000475111 TMEM30A-001 protein_coding Homo_sapiens 0 1345
ENST00000518161 TMEM30A-004 protein_coding Homo_sapiens 0 457

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